Detail information of AT2G31060_circ_g.5


General Information
CircRNA Name AT2G31060_circ_g.5
ID in PlantcircBase ath_circ_015816
Alias NA
Organism Arabidpsis thaliana
Position chr2: 13214952-13215792  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G31060
Parent gene annotation Elongation factor family protein
Parent gene strand -
Alternative splicing AT2G31060_circ_g.1 AT2G31060_circ_g.2 AT2G31060_circ_g.3 AT2G31060_circ_g.4 AT2G31060_circ_g.6 AT2G31060_circ_g.7 AT2G31060_circ_g.8 AT2G31060_circ_g.9
Support reads 7
Tissues inflorescences
Exon boundary   No-Yes
Splicing signals   CT-CC
Number of exons covered AT2G31060.3:3
AT2G31060.2:3
AT2G31060.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGGACTTCATATGACTCTGACAAGCCTGGAATAACGTTTATGGCAAGATTTGTTTCAGCTTC
TGCCATTAACCGGTCCCCGATTCTTCCTCCAGTTAAttgaaggacaagttagtgacagtctcgt
cctaccctcatttccagggacagggcccatgtcaataacttccgcccgcctgtgggagagagct
tccatcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAAGGACAAGTTAGTGACAGTCTCGTCCTACCCTCATTTCCAGGGACAGGGCCCATGTCAAT
AACTTCCGCCCGCCTGTGGGAGAGAGCTTCCATCACTAATCCTACGTGTTCATCATTAATCTCA
ATAGTCACCTCTTCAATTGGTTCAAGCTTTTGTCCCTTTTCAGTTTTATACCTGAACATAAAGG
ACAAACGCTCAGAAGTCAGACGAAGAAGTACAACAAAGTTTGTAGAAATAAAGACACTATAAAG
GAGTTTTTCTAGGCTAAAAAGTAATCCATAGTCGAACAAACAATAACCAAGTAATGTTTAGTGT
AATAGTAACAGCATAGAAATCAGGTAACTTGGTAAAAAATAAAAGAATTCTTCTATTGCTTTAT
GACACAAACTGGTAAGACCCTTTTCTTCAAAAGCCCACTAAGAACCTCTACAACTACCAACATC
TAATAACCTCAACAACTAACTCTGATTATACGACGAATATAGTATGTAGTGTAAACAAAGAGAT
GTGACTAACATGACTTTAGGTGGTGAGACTGAGAGCTCAAAACCTTCCCGCCTCATATTCTCAA
TCAAGATACCTGTTAGACACGACAGAAATTAATTTACCTGGCATAGAGAAATAAATACAGTTAC
GTGTTTTCTGGCGTGTGTCATACTTTATATCCGTCTTTACAGGTGAACAAACACTAAACACAAA
CTGGAAAAGAACAAACCAAGTTGAAGTTCTCCTCTCCCTTGGACTTCATATGACTCTGACAAGC
CTGGAATAACGTTTATGGCAAGATTTGTTTCAGCTTCTGCCATTAACCGGTCCCCGATTCTTCC
TCCAGTTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.154113655
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017