Plant Circular RNA Database

Detail information of AT5G17310_circ_g.9

			
						 General Information
					
						CircRNA Name
						AT5G17310_circ_g.9
					
						ID in PlantcircBase
						ath_circ_038797
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 5697702-5699479  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							AT5G17310						
					
						Parent gene annotation
						
							UTP--glucose-1-phosphate uridylyltransferase 1
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G17310_circ_g.1 AT5G17310_circ_g.2 AT5G17310_circ_g.3 AT5G17310_circ_g.4 AT5G17310_circ_g.5 AT5G17310_circ_g.6 AT5G17310_circ_g.7 AT5G17310_circ_g.8 AT5G17310_circ_g.10 AT5G17310_circ_g.11 AT5G17310_circ_g.12 AT5G17310_circ_g.13 AT5G17310_circ_g.14 AT5G17310_circ_g.15 AT5G17310_circ_g.16 AT5G17310_circ_g.17 AT5G17310_circ_g.18 AT5G17310_circ_g.19 AT5G17310_circ_g.20 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G17310.4:10
AT5G17310.1:10
AT5G17310.2:10
AT5G17310.3:10
AT5G17310.5:10
AT5G17310.6:10

General Information
CircRNA Name	AT5G17310_circ_g.9
ID in PlantcircBase	ath_circ_038797
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 5697702-5699479 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	AT5G17310
Parent gene annotation	UTP--glucose-1-phosphate uridylyltransferase 1
Parent gene strand	-
Alternative splicing	AT5G17310_circ_g.1 AT5G17310_circ_g.2 AT5G17310_circ_g.3 AT5G17310_circ_g.4 AT5G17310_circ_g.5 AT5G17310_circ_g.6 AT5G17310_circ_g.7 AT5G17310_circ_g.8 AT5G17310_circ_g.10 AT5G17310_circ_g.11 AT5G17310_circ_g.12 AT5G17310_circ_g.13 AT5G17310_circ_g.14 AT5G17310_circ_g.15 AT5G17310_circ_g.16 AT5G17310_circ_g.17 AT5G17310_circ_g.18 AT5G17310_circ_g.19 AT5G17310_circ_g.20
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G17310.4:10 AT5G17310.1:10 AT5G17310.2:10 AT5G17310.3:10 AT5G17310.5:10 AT5G17310.6:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATCCTCAGTGAAATAGACGTACCTTTTGTGTGTCATCATGTGTATTGAATGAGTTCATAAGAAC
CAAAGGAACCTTGCAGTTATACTTGTTGTTGAGATTccttatcgcagcaccagctgcagtttcc
agctgaagaactttgactccgtcaacttcctgagaagagttaagactaattatgcagaactgca
atagacta

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCTTATCGCAGCACCAGCTGCAGTTTCCAGCTGAAGAACTTTGACTCCGTCAACTTCCTGAGAA
GAGTTAAGACTAATTATGCAGAACTGCAATAGACTAACTACGTCTTGTGGTATGATTGTAGATC
TAGTACCTTCGGGTTTGGGATGATCTCCATTTTAAGTGCATCAGCTTCCACAAGCTTTTTGATG
GCTTTCAAGTTCACCCATCTGTAAAAAATTAAACAGTTGAGTGTCCGCATATAAATTTGTAAGC
TTCCATGTTTTGGGGACTAGAGAGCTACAGCTACTACTTACAGGTTGTTGGTGTTGAAAATCTT
GAATTTCTCAATTGATTTGAATTCATTTACCTACGAGAAAGACAAGCAATGTAACGCTTAGCGA
CACGTAGTAGATAGAGTTAAGTAATTTTGTTTCATGCAAGGAGCAAAGAGAGCTACTGAAACAG
AGCAAAGAGTGACTAACAGCTAGAAGAATTACAAACAAGCTCAAGACAAAAGAAATCTAAATAG
AGACTAAAAAAGAAAAAAGAAAAAGAAGAGGTGTGGACTTACATGTTCATCAGGAACCTGAGCA
ATCTCCAAAAGCTGAGATACACAACAGAGGAAGTAAATTTAGAGGTCAATAAGACTGCTTACAT
TCTTCAATATCATAAGAAAAACGAAAAAGTGAGAAAATCAGGAGTTGCAAAGAGACAATAATAT
ATATCTCCACATATTTAATTAGGACACGTATAATAAGAAGAGACATTGCAGAATGCACAGACAA
TCTTTAACATGTAATAACACCAAGTTTACCTGTACTTTTCCTTCGTAAGAAATGAGAGTTCCTC
CCTTTACATCAGCTAGTGTTTTGGGTGTAACCTCCATACAGTACTCATTTTTGTTCTGGATCAG
GTGCTTCAAGATTTCTGAAACAGCATGGAGTGAAGGGCAGAAAAAAATTAGTCTCTGATTGAAT
GTTATTATCCTGATTGCAACTAAAGCAAAAGTAATAAAAGAGAAAAGATAACTAAGAAGGATAT
ATACTTAAGTCAACGATTGCGCCCAAGTTGTCTGAGTTGGCGATGAACACATACTCCTTACCCT
GAATAGTGTGAGAAACTCAGAATCAGAATTAAAATGGCAAACGTTGAAAGACACAAACATGAAC
GATACATTCTGGAGACAAGAAAACATTAATAGGTTACATCAAAGAAAGAACCTGTGATAAGAAC
GCATCAAGCTTGCCACTGTTCATGAGAGATGGGAATACATCACCGTGACCGGGAGGATACCTTC
ACAAATTCATCTTTTATAAGTGGTGCAATCTGATAGATAACACAGAAGGATGTACAAATGCAAA
TGGAATCTCAATGTAAATGCACTTTGACTGGAAACCATACCATCCATCCTTGTCAGTCTTTCCT
TTGCTTGGCCACGGCACAAACTCATCAGCAACAACACGAGGATACTTGCTCTACATAAAAGTCA
ATATGATTAGTTCCATACTTGCTCTACTCTGGATCGTCCAAATAAATGAGCTTTTAATTTCTTA
ACTTGTTATGGCATTGCCATGAAATACCTGATTAAAAGTGTGAATATCAACATTTGACTTGGTG
TATTTTTCCACAATCTGAACAAAGACAAAAATCAGTAAGCCTAAAAGTATAAGATACATGTAGT
ACAAAAAAGATGTGATCCTCAGTGAAATAGACGTACCTTTTGTGTGTCATCATGTGTATTGAAT
GAGTTCATAAGAACCAAAGGAACCTTGCAGTTATACTTGTTGTTGAGATT
						
					

			
		

Sequences
Splice junction sequence	ATCCTCAGTGAAATAGACGTACCTTTTGTGTGTCATCATGTGTATTGAATGAGTTCATAAGAAC CAAAGGAACCTTGCAGTTATACTTGTTGTTGAGATTccttatcgcagcaccagctgcagtttcc agctgaagaactttgactccgtcaacttcctgagaagagttaagactaattatgcagaactgca atagacta
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCTTATCGCAGCACCAGCTGCAGTTTCCAGCTGAAGAACTTTGACTCCGTCAACTTCCTGAGAA GAGTTAAGACTAATTATGCAGAACTGCAATAGACTAACTACGTCTTGTGGTATGATTGTAGATC TAGTACCTTCGGGTTTGGGATGATCTCCATTTTAAGTGCATCAGCTTCCACAAGCTTTTTGATG GCTTTCAAGTTCACCCATCTGTAAAAAATTAAACAGTTGAGTGTCCGCATATAAATTTGTAAGC TTCCATGTTTTGGGGACTAGAGAGCTACAGCTACTACTTACAGGTTGTTGGTGTTGAAAATCTT GAATTTCTCAATTGATTTGAATTCATTTACCTACGAGAAAGACAAGCAATGTAACGCTTAGCGA CACGTAGTAGATAGAGTTAAGTAATTTTGTTTCATGCAAGGAGCAAAGAGAGCTACTGAAACAG AGCAAAGAGTGACTAACAGCTAGAAGAATTACAAACAAGCTCAAGACAAAAGAAATCTAAATAG AGACTAAAAAAGAAAAAAGAAAAAGAAGAGGTGTGGACTTACATGTTCATCAGGAACCTGAGCA ATCTCCAAAAGCTGAGATACACAACAGAGGAAGTAAATTTAGAGGTCAATAAGACTGCTTACAT TCTTCAATATCATAAGAAAAACGAAAAAGTGAGAAAATCAGGAGTTGCAAAGAGACAATAATAT ATATCTCCACATATTTAATTAGGACACGTATAATAAGAAGAGACATTGCAGAATGCACAGACAA TCTTTAACATGTAATAACACCAAGTTTACCTGTACTTTTCCTTCGTAAGAAATGAGAGTTCCTC CCTTTACATCAGCTAGTGTTTTGGGTGTAACCTCCATACAGTACTCATTTTTGTTCTGGATCAG GTGCTTCAAGATTTCTGAAACAGCATGGAGTGAAGGGCAGAAAAAAATTAGTCTCTGATTGAAT GTTATTATCCTGATTGCAACTAAAGCAAAAGTAATAAAAGAGAAAAGATAACTAAGAAGGATAT ATACTTAAGTCAACGATTGCGCCCAAGTTGTCTGAGTTGGCGATGAACACATACTCCTTACCCT GAATAGTGTGAGAAACTCAGAATCAGAATTAAAATGGCAAACGTTGAAAGACACAAACATGAAC GATACATTCTGGAGACAAGAAAACATTAATAGGTTACATCAAAGAAAGAACCTGTGATAAGAAC GCATCAAGCTTGCCACTGTTCATGAGAGATGGGAATACATCACCGTGACCGGGAGGATACCTTC ACAAATTCATCTTTTATAAGTGGTGCAATCTGATAGATAACACAGAAGGATGTACAAATGCAAA TGGAATCTCAATGTAAATGCACTTTGACTGGAAACCATACCATCCATCCTTGTCAGTCTTTCCT TTGCTTGGCCACGGCACAAACTCATCAGCAACAACACGAGGATACTTGCTCTACATAAAAGTCA ATATGATTAGTTCCATACTTGCTCTACTCTGGATCGTCCAAATAAATGAGCTTTTAATTTCTTA ACTTGTTATGGCATTGCCATGAAATACCTGATTAAAAGTGTGAATATCAACATTTGACTTGGTG TATTTTTCCACAATCTGAACAAAGACAAAAATCAGTAAGCCTAAAAGTATAAGATACATGTAGT ACAAAAAAGATGTGATCCTCAGTGAAATAGACGTACCTTTTGTGTGTCATCATGTGTATTGAAT GAGTTCATAAGAACCAAAGGAACCTTGCAGTTATACTTGTTGTTGAGATT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.139838564

Conservation Information
Conserved circRNAs	NA
PMCS	0.139838564

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5699438-5697704(-)
						
						Potential amino acid sequence
						
							MNSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKDGWYPPGHGDVFP
SLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLKILKHLIQNKNEYCMEVTPKTLADVKGGTLI
SYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVD
GVKVLQLETAAGAAIRNLNNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPR
VVADEFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLK
ILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTN
NLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRNLNNKYNCKVPLVLMNSF
NTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKDGWYPPGHGDVFPSLMN
SGKLDAFLSQGKEYVFIANSDNLGAIVDLKILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEG
KVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKV
LQLETAAGAAIRNLNNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVAD
EFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLKILKH
LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWV
NLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIR(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5699438-5697704(-)
Potential amino acid sequence	MNSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKDGWYPPGHGDVFP SLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLKILKHLIQNKNEYCMEVTPKTLADVKGGTLI SYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVD GVKVLQLETAAGAAIRNLNNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPR VVADEFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLK ILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTN NLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRNLNNKYNCKVPLVLMNSF NTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKDGWYPPGHGDVFPSLMN SGKLDAFLSQGKEYVFIANSDNLGAIVDLKILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEG KVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKV LQLETAAGAAIRNLNNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVAD EFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLKILKH LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWV NLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIR(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT5G17310_circ_g.9

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