Detail information of Zm00001d050112_circ_g.1


General Information
CircRNA Name Zm00001d050112_circ_g.1
ID in PlantcircBase zma_circ_001687
Alias circ2244
Organism Zea mays
Position chr4: 66639458-66641088  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d050112
Parent gene annotation Putative DUF1296 domain containing family protein
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d050112_T011:3
Zm00001d050112_T026:3
Zm00001d050112_T004:3
Zm00001d050112_T021:3
Zm00001d050112_T025:3
Zm00001d050112_T010:3
Zm00001d050112_T035:3
Zm00001d050112_T018:3
Zm00001d050112_T007:3
Zm00001d050112_T037:2
Zm00001d050112_T020:3
Zm00001d050112_T031:3
Zm00001d050112_T028:3
Zm00001d050112_T022:3
Zm00001d050112_T006:3
Zm00001d050112_T029:3
Zm00001d050112_T008:3
Zm00001d050112_T033:3
Zm00001d050112_T003:3
Zm00001d050112_T014:3
Zm00001d050112_T027:3
Zm00001d050112_T017:3
Zm00001d050112_T019:3
Zm00001d050112_T001:3
Zm00001d050112_T009:3
Zm00001d050112_T002:3
Zm00001d050112_T032:3
Zm00001d050112_T030:3
Zm00001d050112_T024:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAGGAGAATGGAATAAGTTTGATCATGGGAAAAGGTAGTGGTTCTACTCCGATAACCAATAT
GAATATGGATGTCAAAGCTTCCACTTTCATGCCAAGgatacctttcatgaggtgaaaaggaagc
gtgacaagaaaaaggaggtatggtgatctttccacctatccctgttctttcctctttcattgta
tattcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATACCTTTCATGAGGTGAAAAGGAAGCGTGACAAGAAAAAGGAGGTATGGTGATCTTTCCACC
TATCCCTGTTCTTTCCTCTTTCATTGTATATTCATCACTAGTCCAGATTTTTGCGCAAGTCATT
GGAGCTAATAATGTTATTCAGAATGAATTACCTTATGATTGATGCTAGGTTTAATAATGACAAT
TGGTCTTCATTCTTTGGTATTGCATATGTATTATTCTTATAATATCCAGTATCTATATCATTTT
GTTTATTGTGACTGCATCCAGTTATTTCGAGGTCAGGTCACTTACATGGGCTTACTTTGGTATT
TTATGTATTATGAATTTTCAGTATTTGGTTGGGCCACTTTCACATAATTTGATATATTCCTTTT
TCTTTCCTTATCTATAATGGAGAAGGGAATACTGCTGGCCTGATTTGGAACATGTTGCTATACT
TCTGGCAACTACTTTTGCCCAACAGTTTGAGAAATAAGCAGTACACATCAAAGTCAAATGTACC
TGTTTGAATGGTGGGTGCTGTATTCAAAGTATAATGTGTTTGGAGGGTGAATCGCTAAAGTATT
ACTGAAAACAACACTCAGGTTTAAATAGTATTACATGTTACATAACCTTATGTTTAATTTTTTT
TGTAGAAAATATATTCTGAAGCATCTAAATCATGCACATCAGCACATTGCATTAATTTCCTCAG
AGTTGAGTTTTACAACACTGATTGTAGTTATTCTGATTACTCATTTGAAAAATTGGTAGACAGT
CTGAAACAATAAGTTAGGTAATGTTGAGAACATGTGGATGGAGGTCCTGGGCTGTACTGATTTA
CAGTAGGCTTAAGCATGAATTTCACAGCAGTCTCCTAAACAACCGCTAAGGTGCATATTGCCTT
ATTTCTGTTTGCATCAAGTAACACATAAACACGGATGATGTAATGTTGCCTTCTTTGGCTCAGT
AATGTTTCAGTTTGGTATACAAAATTTTCAGTGAGAACATTGACTATATTGTGGTTAAAAGCTA
CTTTTATTTCTTAAATTGATTGCAACTCAATTTACCTTTATCCACAGGTTAGTAAAGAGCCATC
AGATTCTCGGTGGAGACCTGCCGTGCAGGGGCAAGGTGGAAAGAATTGTCGGAATTGTGCTTCA
CGCAGTTTGTCCAGCTCTAATGGTATTTTTTACAGCATTTTGTCAACATAAGATTTTGCTGGGT
GCTATTTAAAAGACAATTGGGGGTTTGCATTTACATAGACTACATGCTACCGTGTTACACTATG
AAGATTATCATTAAGTGGCCATGCGTACATATTTTGATGTTGAAAATTCTGATCACAAGTTAGA
GCTGGTCTTGGCACAAACTTCTTGAGAAAACAAGCTTTCGAAAGTTTTTATTACCTGACCAATC
ATGTTAATTTTTAACATAAAGTAAACTCGATACACACTTTAACCCTCTTAAATGGTTACACAAA
ACCAATGCATTACTTTTTTTATCTCATTGAAGATTCTGCTGGACGAAGTGCTATTTCTGGAAAG
GAGAATGGAATAAGTTTGATCATGGGAAAAGGTAGTGGTTCTACTCCGATAACCAATATGAATA
TGGATGTCAAAGCTTCCACTTTCATGCCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.026387758
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b