Detail information of BGIOSGA002663_circ_g.1


General Information
CircRNA Name BGIOSGA002663_circ_g.1
ID in PlantcircBase osi_circ_009344
Alias Chr01:1182424_1183794(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1448134-1449504  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA002663
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA002663_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA002663-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTT
GCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGgctttgacaaggacgtgccagactccgc
cgatatggagccgccgttgctgggcctgccgaattatcaacaggatggttcttatgcagaatac
cttgctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTTGACAAGGACGTGCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTA
TCAACAGGATGGTTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGAC
TGGTCAGATTCTTCTCTTCACCTGCTGTGCACATATGGATAGAGTGTAGATCTCCTCATCGAAT
TTTTGTTGTAGCTTTGTTCACAACATGATGGGAATAACAAGGAACATAACTAAGTTATTGCCTC
ACTAGGGAATGCAAAACACGTTAGTGTTATAGTAATATCTACCAACATGTAGTTTCGATAACAG
CCAATGCCTATCGAGTGTTGTCTTCTAGCTAAGGTTGCCTGGTTCCCACTGCCCATTGGCCAAA
TTAAATTCAGAACTTTTAGACTTGTCTTTTCCCTATCTACTAGCTACTATGGACGGACTACTTT
TTTTTTGCAGCAATGTTCCATTTTAAGGGTAAAAAGGCAGAAAATCTTCATTTTCTGCTTCAAT
CATTATATCGCTGGTTATGATGAAAGTCTAACTTGTATGCATGTAGGTTTGGCACGGAGAACAT
GGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTA
CTCGACATAGGAACTGGGAGTGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTATGTTGATG
AAATGGCAATCTTCCATTTGCATTTCTCCAACCTCAGGTTACTTTAATGTGAATGCTGTTATTG
TTGTCAACTTCAATGTATTGGTGTTGAGATGCCTTTCTTAACGTTTTCTGACAGCCCTGAAATA
GACTTATTGTCTATTCTTTTGCTCTTGCGTTTGTGCTCCTTCTCTCTTGTGTTTGTGTTCCTTC
TATATAATTAGAGAGTATGAATTTGGAGTTGTAAAGTTTGGTACCATAAGGCAAGTATAATTGA
TTTAGTTAAGCAGACCTATCAATTTCCCAATGGTCTTTCTATCACATGCTTAAAATCTGGCCAT
CTTTGTAAATTGAAGGGAGATGCCCTTTGATAATTATTCTTGGAAGCTGCATCTGGTTTGCTGT
TAAGCAAAGGATCATGCTAGCACAGTCTCATGTTTTCTTTTTCTCGAATAGCTATATGTTTTGT
AGATTGGGAGAAACATCTCTATTGACTTGGAGTATTTTTATAAATTAGGAGACATTCAACTATG
TATTTCACTCTGTTGAATTGTTAATGCCTCTTGACAGTACTGATATGTCCATATACAGGTTCTC
TGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTTGCTATCCGT
GATGGGTTTGAGCACATTAATTTCTTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021