Detail information of BGIOSGA032547_circ_g.3


General Information
CircRNA Name BGIOSGA032547_circ_g.3
ID in PlantcircBase osi_circ_008789
Alias Chr10:3660253_3668917(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3040577-3046221  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.1 BGIOSGA032547_circ_g.2 BGIOSGA032547_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GA-CA
Number of exons covered BGIOSGA032547-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTATGAGCATGGCTTCATCCTAGTTTTGGTATGATATGATTTCAAGAGGTATATGATTTTGTT
ATAAAGACAAAATAGTTTTCTGTTTCTGTACCCTAGgaacttggatgaggtgcaatcgtacatt
ctggttaagagaacttcagaaaacactccaacagctcttgttgctgatactgaagagtttcttc
gcctggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021