Plant Circular RNA Database

Detail information of CSA035205_g_circ2

			
						 General Information
					
						CircRNA Name
						CSA035205_g_circ2
					
						ID in PlantcircBase
						csi_circ_002462
					
						Alias
						Cs-circRNA1978
					
						Organism
						
							Camellia sinensis						
					
						Position
						
							chrSc0004566: 73530-77908  JBrowse»						
					
						Reference genome
						
							v1						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI2
					
						Parent gene
						
							CSA035205						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							CSA035205_g_circ3 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-CC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						CSA035205.1:5

General Information
CircRNA Name	CSA035205_g_circ2
ID in PlantcircBase	csi_circ_002462
Alias	Cs-circRNA1978
Organism	Camellia sinensis
Position	chrSc0004566: 73530-77908 JBrowse»
Reference genome	v1
Type	e-circRNA
Identification method	CIRCexplorer, CIRI2
Parent gene	CSA035205
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	CSA035205_g_circ3
Support reads	NA
Tissues	leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-CC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	CSA035205.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCCTCAAGTCCTCAAGACAAGTGAGCAAATATGACAAAGAGCGCTCATCCTCGAAGGGTGTATT
TGCCACACATCGAGCAATATCGGCAAGTTCATTAATttaatatgaccatcgtgtgcaatcaaca
aattatcaggctttaaatcgcgatgaaccacccgaagtgaatgtaaatattccaaagcaagcac
ctgcccat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TTAATATGACCATCGTGTGCAATCAACAAATTATCAGGCTTTAAATCGCGATGAACCACCCGAA
GTGAATGTAAATATTCCAAAGCAAGCACCTGCCCATAATTAAATCTCATATTAAGACTAGAGCA
TATTGTAAGCGAAAAAATTACTTCCAAAGAGAGAGATACTTACAACTTCTGCAATATATACACG
AGCAACATCTTCATCCAAGCAGCCTAGATTTCTCAACAGTGAATACAAATCTCCTCCATTCAAG
TACTCCATCACAAGATACAAATTTTCACGACAAGTAAATGAATAAAAGAAGCGAACCTGGCATA
TTTGACATTAAGGTTAGAATGAAATAACCATCTGATAAGTAATGGTAATACACTTTTGATAGCT
AGACCTGCTCACCACAAAAGGATTGCGAACTGATATTAATATATCACGTTCTGCCAAGATACTC
TCAACAGCATTTTTACGAATCATATCTGCCTTTTTAAGAACCTGCAAAAATATTATTGATATGC
AAAATGATTAGAAGTTTAAAATCCAACTCCCTTTCATTGGTCAGAAATGACAAAATTGTAGTAT
AGACCAATAACCGTTAAATGCTAATTCGGACAGGAAGAGGAAATGACAATAAGGGATGCTTCTA
TAGTCCTATGAGCAAAAGACACAAGATCAAGCTCTGTTCGAATAATATTAGCTTGATCGGGAGA
TTATGGGTTCAAGTCCCACAATGTAGTTCTGATCTGTATCCTAAAAATAGAAAGATAATTCTTC
AATCAGTAGTATGGGTATGGTCATCTTCCTTGCTAGATTGTAGCTTACATTCTTCACCCCTCCT
CTCTCTTTATCTCTTGCTCAACCTACTCCCTTTTCCTATTATAGGTTCATTAAGAATATATATA
AGATCAGTAACATCCTCTTGTGCAACTTATATGTCGTCTGGTGATCAAGAGGCTTGGAAGAATG
TGAGGCACCTCCCCACTCGCTGTCTTTTACTACTTCCTTCTTTGCTAGTTCCTTATTTTTTAAC
CAAATGCTACGGAACTAATTAACACATATTTTGGTTATTCAAGAAAAGGGTTTAGAACTGTATA
GGTTGAATCAACTTTAGTATCGAAGCAAGTCCTACGAATTTAAGAACCTACAAGTTGTTTTGAG
TAAACGTCTACAAGTATCTAAATGAAAATGCAAATGAAAATGCAAGTGATCAACACAGAGACCT
TTTTATTCTTTTGCATCAACAATAAGATCTAATAAAAGGAAGTAGAAAGATGAGTTCCAAAAAA
GTATAGCAAATAACAAGTCACACATAACTCTCAACTCTTTACTAATAAAAAACAAAGGGATCCC
TCTAAAAGGAGACCACATTGAAGCCCGAAAGGAAGACAAATAACAAGTTGTCCCATAAACCTCC
TAATTTTTCAGACTATTCCCTTCCAAAAAAGTATAGCAAATTACATATCACACATAACTCTCAA
AGCTTTACTGATAAAAAACAAAGGGATCCCATTAAAAGAAGATCACCCTGAAGCCTGAAAAGGA
AGACAAATAACAAATTGTCCCATAAACCTCTCAATTCTTCAAACGGTTCCTTAAAGGGTTATTT
ACATGAAGACCCCCAAAACTATAAAAGTACACAAATGGACCCCTCTACCATTGATAAGTATCAC
TTGGCCCCCATAAACTATAAAAGCATACAAATTGGACCCCCTAACGGAAGGGATCAAAGTGACA
CTTCTCAGAAGTTTAGGGGGCCCATTTGTATGCTTTTATAGTTTAGGAGGCGAAATGATACTTC
CCAATAGTTTAGGGGGTCCATTTGCATTATAGTTTAGGAGGCGAAATGATATTTCTCAATAGTT
TAGGGAGTCCATTTGCACACTTTTATAGTTTAGGAGGTCAAAGTGAGACCCTCTCAATAGTTTA
GGGAGTCTATGTGTAAATAACCCTTCCTTACATTTAAAAATGTACACATAAACTCCTTGTGGTT
TGGAGTAAAATGCAAAATTATCTCCTCTCTCTCTCTCTATTTTTTTGTTCTTTCAAGCCTACTT
TAATGGCAGAAAATCTACACCCACCCACATGGAATATTGGTTCGTCCCACCTTCCAACACCCAC
TCGGCTAACCAAAATACCCCTCACCAGCCTCATGTACAGGCCATGGTTGACACCAAAACCTAGC
ATCATATGTAGAGGTGTTGTGCATATTTAAACTCATTTTAAGTGGTTGTTGGGTGTTATTGGTG
GGTGTTTCACCTATTTATGGTGAACATGCAAATGCATACATCAATTCAAAGGAACTAACGCTGA
TAAAAAAAAAAATTAAAAATCAAGGGAATTAATTTGTTAGAGTGAAAGCAATGGTGGCCACATC
TTCCTCACCTCATATATCGTCTCAACCATCAAGTTGTAATAAGAATTAGGTTTCTCGATTTGTG
ATTTGTAATTTTCTTTCCAATCTCTTGTTAGGATCACCATTGATGGTAGCTATTTGGGGGGTTT
TAAAACTAGAAAAAAATGATAATATTCTCAGTCTTATTGGATAATTGAATCAAATCAATAAGTA
GAAGGGTAAAAACGTTTAATCTCTCATGCTCTGTTTTTTTTTCATCAGTTAGTGAAATAATTAT
CTGGAACATTATTATGCAAAATTGATAATGTTCTTAGTTTAAAAATTGAAAAAAAAAAAACTGA
TAATATTCTCAATTTTACTAAATAGGACTTATTGGTTTTAGATAGAACCTAAACTACCATAACA
TTTGTAAATAGGACTTTTAGGTAATTAACTCTCTAAGAAAAATATGATGCTATAACCAATCCAA
TCCAATCCAATCCAAATATTTCAAAACTATAACTGAGTAGAACCCCACTTAAAAGGACAGTTCT
CTAAACTCACAGGACAATGATCAGATACTAATATATGAAGCACCCCTGCTTATCCCAAAGAATA
TATAGAACTATCAAATGTATTACAAATCAGACCTGCCTAAATATTTCACTGGGTGAACCAAACA
TTCAGTTTAGGAAGATCAATCAGATTGCAGTCTATAATAAATGCATCAAAATATCTCACCATCC
ACACACAATTAAAAGAATTTAAACGAAACAAGCCAGCTAACTCATCTCACAAAGATTCCCTTAA
TCTCAGACTATTAAGACCATATACTCCTATTAGTCAACATTCACTAAAACCAAGGATCCAAAAC
CTAATGGCGCTGAAAACTCCCCAATAACTAACAAGAAACTATTGTGCATATATTGCAGGCAGAG
AATTTTATAGAACTTTAGAGAACATCAAAAACTAACCATAATAACAATTGACACAAAAAGTATA
TCACAATAATAATTAAGAAAAGAAATATCACCAACTTAAATGACACATGCACGGTGCAGCAATG
TTGGAACATCAAATTTAATATAGAAAATGAGCAACACTTCAAGGAAAAGCAAACTGCAAATTCT
ATGAAGAATGTACCTTTATCGCAAAGAGGTCCCCTGTTGTTCTCTTTTTTGCTAAAAACACCCG
GCCAAATGCCCCTCGACTAATTGGTTTTATGATTTCGAAGTCATCTATAGATGTTCGGTCCTTA
GCAGAATGTAATGGGCTGGTTCTCAAGCTACGTACAACATCATCTTCCAAAGGTGCATCTTCAT
CAATAACAGTACTTGTTATATCAACCTTCTCATCGTCAACAAGCTCACAAAGCTGTAGGTACTT
CTCCCTACAGAATCACTAATTGTTACTTTTTGACTAGGTACAGAAAGTAGCAAGGAATACCTTT
CACTCAATCGTAGACTCAGTATGGTCCTTAGAAGAGTTGAGGAGAAATGAAGAACTAGAAAAGG
GAAAAGGAAACAAAAAAAAATATATATCTGTCCCTTGCTTAGTTGTCCATGGAAAAATAGATGA
AAAATGAAATAAAGCATTGAGGAAGCAACTTCATTTGTATGTTTTTTGGGAGAGAGATTAAAAT
AAAAGAAGATGAAATGGATTTCTCACAATTTTTTAACCAAAGTCACATTTCTTCCCCAATTTAT
GTCATATTTCTTTTCCCAGCTACTTTTCTATAGCAATCAAACTGCGAAATAAATCCCTTTGCAT
TTTTTGCCTCCAGTCCTTGTTTCCAAGAACCAAACAACGCCCAAATATTAAAAAAAAAAAAATC
TCAAGTAAAAGCTGAATGCAAGTACTCATGCTGTTGATAGACTCACCGAATCAGCTTCTCTATG
CGTGCTCCAAAAGTCTCTACTGTAAGCGCATCCAACTTTCTTCTATCAATAACAACCCTCAAGT
CCTCAAGACAAGTGAGCAAATATGACAAAGAGCGCTCATCCTCGAAGGGTGTATTTGCCACACA
TCGAGCAATATCGGCAAGTTCATTAAT
						
					

			
		

Sequences
Splice junction sequence	CCCTCAAGTCCTCAAGACAAGTGAGCAAATATGACAAAGAGCGCTCATCCTCGAAGGGTGTATT TGCCACACATCGAGCAATATCGGCAAGTTCATTAATttaatatgaccatcgtgtgcaatcaaca aattatcaggctttaaatcgcgatgaaccacccgaagtgaatgtaaatattccaaagcaagcac ctgcccat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTAATATGACCATCGTGTGCAATCAACAAATTATCAGGCTTTAAATCGCGATGAACCACCCGAA GTGAATGTAAATATTCCAAAGCAAGCACCTGCCCATAATTAAATCTCATATTAAGACTAGAGCA TATTGTAAGCGAAAAAATTACTTCCAAAGAGAGAGATACTTACAACTTCTGCAATATATACACG AGCAACATCTTCATCCAAGCAGCCTAGATTTCTCAACAGTGAATACAAATCTCCTCCATTCAAG TACTCCATCACAAGATACAAATTTTCACGACAAGTAAATGAATAAAAGAAGCGAACCTGGCATA TTTGACATTAAGGTTAGAATGAAATAACCATCTGATAAGTAATGGTAATACACTTTTGATAGCT AGACCTGCTCACCACAAAAGGATTGCGAACTGATATTAATATATCACGTTCTGCCAAGATACTC TCAACAGCATTTTTACGAATCATATCTGCCTTTTTAAGAACCTGCAAAAATATTATTGATATGC AAAATGATTAGAAGTTTAAAATCCAACTCCCTTTCATTGGTCAGAAATGACAAAATTGTAGTAT AGACCAATAACCGTTAAATGCTAATTCGGACAGGAAGAGGAAATGACAATAAGGGATGCTTCTA TAGTCCTATGAGCAAAAGACACAAGATCAAGCTCTGTTCGAATAATATTAGCTTGATCGGGAGA TTATGGGTTCAAGTCCCACAATGTAGTTCTGATCTGTATCCTAAAAATAGAAAGATAATTCTTC AATCAGTAGTATGGGTATGGTCATCTTCCTTGCTAGATTGTAGCTTACATTCTTCACCCCTCCT CTCTCTTTATCTCTTGCTCAACCTACTCCCTTTTCCTATTATAGGTTCATTAAGAATATATATA AGATCAGTAACATCCTCTTGTGCAACTTATATGTCGTCTGGTGATCAAGAGGCTTGGAAGAATG TGAGGCACCTCCCCACTCGCTGTCTTTTACTACTTCCTTCTTTGCTAGTTCCTTATTTTTTAAC CAAATGCTACGGAACTAATTAACACATATTTTGGTTATTCAAGAAAAGGGTTTAGAACTGTATA GGTTGAATCAACTTTAGTATCGAAGCAAGTCCTACGAATTTAAGAACCTACAAGTTGTTTTGAG TAAACGTCTACAAGTATCTAAATGAAAATGCAAATGAAAATGCAAGTGATCAACACAGAGACCT TTTTATTCTTTTGCATCAACAATAAGATCTAATAAAAGGAAGTAGAAAGATGAGTTCCAAAAAA GTATAGCAAATAACAAGTCACACATAACTCTCAACTCTTTACTAATAAAAAACAAAGGGATCCC TCTAAAAGGAGACCACATTGAAGCCCGAAAGGAAGACAAATAACAAGTTGTCCCATAAACCTCC TAATTTTTCAGACTATTCCCTTCCAAAAAAGTATAGCAAATTACATATCACACATAACTCTCAA AGCTTTACTGATAAAAAACAAAGGGATCCCATTAAAAGAAGATCACCCTGAAGCCTGAAAAGGA AGACAAATAACAAATTGTCCCATAAACCTCTCAATTCTTCAAACGGTTCCTTAAAGGGTTATTT ACATGAAGACCCCCAAAACTATAAAAGTACACAAATGGACCCCTCTACCATTGATAAGTATCAC TTGGCCCCCATAAACTATAAAAGCATACAAATTGGACCCCCTAACGGAAGGGATCAAAGTGACA CTTCTCAGAAGTTTAGGGGGCCCATTTGTATGCTTTTATAGTTTAGGAGGCGAAATGATACTTC CCAATAGTTTAGGGGGTCCATTTGCATTATAGTTTAGGAGGCGAAATGATATTTCTCAATAGTT TAGGGAGTCCATTTGCACACTTTTATAGTTTAGGAGGTCAAAGTGAGACCCTCTCAATAGTTTA GGGAGTCTATGTGTAAATAACCCTTCCTTACATTTAAAAATGTACACATAAACTCCTTGTGGTT TGGAGTAAAATGCAAAATTATCTCCTCTCTCTCTCTCTATTTTTTTGTTCTTTCAAGCCTACTT TAATGGCAGAAAATCTACACCCACCCACATGGAATATTGGTTCGTCCCACCTTCCAACACCCAC TCGGCTAACCAAAATACCCCTCACCAGCCTCATGTACAGGCCATGGTTGACACCAAAACCTAGC ATCATATGTAGAGGTGTTGTGCATATTTAAACTCATTTTAAGTGGTTGTTGGGTGTTATTGGTG GGTGTTTCACCTATTTATGGTGAACATGCAAATGCATACATCAATTCAAAGGAACTAACGCTGA TAAAAAAAAAAATTAAAAATCAAGGGAATTAATTTGTTAGAGTGAAAGCAATGGTGGCCACATC TTCCTCACCTCATATATCGTCTCAACCATCAAGTTGTAATAAGAATTAGGTTTCTCGATTTGTG ATTTGTAATTTTCTTTCCAATCTCTTGTTAGGATCACCATTGATGGTAGCTATTTGGGGGGTTT TAAAACTAGAAAAAAATGATAATATTCTCAGTCTTATTGGATAATTGAATCAAATCAATAAGTA GAAGGGTAAAAACGTTTAATCTCTCATGCTCTGTTTTTTTTTCATCAGTTAGTGAAATAATTAT CTGGAACATTATTATGCAAAATTGATAATGTTCTTAGTTTAAAAATTGAAAAAAAAAAAACTGA TAATATTCTCAATTTTACTAAATAGGACTTATTGGTTTTAGATAGAACCTAAACTACCATAACA TTTGTAAATAGGACTTTTAGGTAATTAACTCTCTAAGAAAAATATGATGCTATAACCAATCCAA TCCAATCCAATCCAAATATTTCAAAACTATAACTGAGTAGAACCCCACTTAAAAGGACAGTTCT CTAAACTCACAGGACAATGATCAGATACTAATATATGAAGCACCCCTGCTTATCCCAAAGAATA TATAGAACTATCAAATGTATTACAAATCAGACCTGCCTAAATATTTCACTGGGTGAACCAAACA TTCAGTTTAGGAAGATCAATCAGATTGCAGTCTATAATAAATGCATCAAAATATCTCACCATCC ACACACAATTAAAAGAATTTAAACGAAACAAGCCAGCTAACTCATCTCACAAAGATTCCCTTAA TCTCAGACTATTAAGACCATATACTCCTATTAGTCAACATTCACTAAAACCAAGGATCCAAAAC CTAATGGCGCTGAAAACTCCCCAATAACTAACAAGAAACTATTGTGCATATATTGCAGGCAGAG AATTTTATAGAACTTTAGAGAACATCAAAAACTAACCATAATAACAATTGACACAAAAAGTATA TCACAATAATAATTAAGAAAAGAAATATCACCAACTTAAATGACACATGCACGGTGCAGCAATG TTGGAACATCAAATTTAATATAGAAAATGAGCAACACTTCAAGGAAAAGCAAACTGCAAATTCT ATGAAGAATGTACCTTTATCGCAAAGAGGTCCCCTGTTGTTCTCTTTTTTGCTAAAAACACCCG GCCAAATGCCCCTCGACTAATTGGTTTTATGATTTCGAAGTCATCTATAGATGTTCGGTCCTTA GCAGAATGTAATGGGCTGGTTCTCAAGCTACGTACAACATCATCTTCCAAAGGTGCATCTTCAT CAATAACAGTACTTGTTATATCAACCTTCTCATCGTCAACAAGCTCACAAAGCTGTAGGTACTT CTCCCTACAGAATCACTAATTGTTACTTTTTGACTAGGTACAGAAAGTAGCAAGGAATACCTTT CACTCAATCGTAGACTCAGTATGGTCCTTAGAAGAGTTGAGGAGAAATGAAGAACTAGAAAAGG GAAAAGGAAACAAAAAAAAATATATATCTGTCCCTTGCTTAGTTGTCCATGGAAAAATAGATGA AAAATGAAATAAAGCATTGAGGAAGCAACTTCATTTGTATGTTTTTTGGGAGAGAGATTAAAAT AAAAGAAGATGAAATGGATTTCTCACAATTTTTTAACCAAAGTCACATTTCTTCCCCAATTTAT GTCATATTTCTTTTCCCAGCTACTTTTCTATAGCAATCAAACTGCGAAATAAATCCCTTTGCAT TTTTTGCCTCCAGTCCTTGTTTCCAAGAACCAAACAACGCCCAAATATTAAAAAAAAAAAAATC TCAAGTAAAAGCTGAATGCAAGTACTCATGCTGTTGATAGACTCACCGAATCAGCTTCTCTATG CGTGCTCCAAAAGTCTCTACTGTAAGCGCATCCAACTTTCTTCTATCAATAACAACCCTCAAGT CCTCAAGACAAGTGAGCAAATATGACAAAGAGCGCTCATCCTCGAAGGGTGTATTTGCCACACA TCGAGCAATATCGGCAAGTTCATTAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Tong et al., 2018

circRNA

Detail information of CSA035205_g_circ2

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