Detail information of BGIOSGA033112_circ_g.3


General Information
CircRNA Name BGIOSGA033112_circ_g.3
ID in PlantcircBase osi_circ_008503
Alias Chr10:19166083_19166272(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16178842-16179031  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033112
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033112_circ_g.1 BGIOSGA033112_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA033112-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGACCATGGGGTGGTCAAGCTCCGTCTGGTTATGGCACTGGGAGTTATGGTGGCAATGCAGGC
TATGCTGCTTGGAACAACTCTTCTGCTGGAGggatttggaggtgttcctgctgggtatggtggg
cattatggcaatccaaatgcgcctggttcaggttaccagggtggtcctccaggagcaaacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATTTGGAGGTGTTCCTGCTGGGTATGGTGGGCATTATGGCAATCCAAATGCGCCTGGTTCAG
GTTACCAGGGTGGTCCTCCAGGAGCAAACAGAGGACCATGGGGTGGTCAAGCTCCGTCTGGTTA
TGGCACTGGGAGTTATGGTGGCAATGCAGGCTATGCTGCTTGGAACAACTCTTCTGCTGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021