Plant Circular RNA Database

Detail information of orai.013G151300_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.013G151300_circ_g.1
					
						ID in PlantcircBase
						gra_circ_001409
					
						Alias
						Chr13:41267132|41271444
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr13: 41267132-41271444  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.013G151300						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.013G151300.1:15

General Information
CircRNA Name	orai.013G151300_circ_g.1
ID in PlantcircBase	gra_circ_001409
Alias	Chr13:41267132\|41271444
Organism	Gossypium raimondii
Position	chrChr13: 41267132-41271444 JBrowse»
Reference genome	Graimondii_221
Type	ue-circRNA
Identification method	CIRI
Parent gene	Gorai.013G151300
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	2
Tissues	leaf
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.013G151300.1:15

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAACGAAGAAAAGAACTGAAACTGGAAAGGTAGAGTCGCCTTTGTCATCGAAAAAGAGGAAAAG
AAGATTTCCCTCAAAAGAAGAAATATCTGAAGCAAGacagtggttcaagttccacttcaggttc
aggttccgattcccattcagatgaaacagatatagaggagaagtccagggctatcgatgaacaa
cgtgcgag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ACAGTGGTTCAAGTTCCACTTCAGGTTCAGGTTCCGATTCCCATTCAGATGAAACAGATATAGA
GGAGAAGTCCAGGGCTATCGATGAACAACGTGCGAGGGAAGAAGAAGATGCACAAGCTGAGATG
GAGCTGAACATTAAAGAAGAGTCTGATGAGTTCAGACTGCCAACAAAAGAGGTTGCCCTTTGAC
TTGGATTGTCTTTGCTGTTAGTATCACTTCAATTCTATTAAGTTACTCATATGTCCTCCCATTT
GTGGTATCACTCAGGAACTTGAAGCAGAGCAACAACGTCCGCCTGATCTTGCAAATCTTCAGAT
GAGAATGAAAGAGAGTGAGTGACTTTTCTGCTAACCGTATTCTTTTAACGGTTAGCCATTTATG
ATCTGATTAGCTAAGATTTTATTCATTTATTTTTAGTTGTTCGAGTGCTCTCAAATTTTAAGCA
TATGAGGCAAGAAGGAACGACAAGGAAGGATTATATTGACCAACTTAAAATTGATTTGGGTTCT
TACTATGGCTACAATGAATTCCTGATCAGGGTTTTGGTTGATGTAATATCTTGTTCCATGTTCT
GTAGTTTGCATTTTTTTCTTTTCTTTTTGGAGAAATTTTTTCTGATCAATTATTATATTAACTC
CTGTCATCTCTTTTATAGATGTTTCCGGTTGTTGAACTCATGGAACTTATTGAAGCTTTTGAAA
AGCCTCGACCTACATGTATCCGGACGAACACTTTAAGGGTGCGAATATACATTCTATGTTTGCT
GCCTTTTAGTGTTTGACTTGTTATGCATCTCTGCTCAAACTATTGGCATAATGTCCTTATATAT
GCAGACTCGCAGAAGGGATCTGGCCGACGTTCTTTCCAAAAGAGGAGTAGAACTGGATCAATTA
AGCAAGTGGTCAAAAGTAAGATCTTTCATGTTTATGATTTTCATTTTTGAATCCTCTAATTTCC
AATGGAGTACAAGAGGCATGTTGATTTTATATTTGTAGGTTGGATTGGTGGTGTATAATTCGCA
TGTGCCCATTGGTGCCACTCCGGAGTATTTGGCTGGCTTTTACTATGTATGTGCCCTTTCATTG
TACTTTTTTTATGTAATGATATAATTATTTAGTAAATATAATTTTTTTGGCACTTTCAGTTATC
TTTATTTTTTTTCAATTAACAGATACAAGGTGCAAGCTCCTTTTTGCCTGTTATGGCTCTTGCT
CCTCAGGAGAAGGAACGGGTAGTTGATATGGCGTAAGTTGCTCCATTCTGTTTGCTATCCTTAT
CTATGCATTGCCTTTTTGTTTGTTTGTTTGTTTGTTTCTTTATTTATTTTACTACCGATATTTA
TGATTGAAGAAAATCTCCATGTGAACCATATTCTAGAAATTGAATATTGGGGTTCATAGTTATA
TTTTGCAGCGTCCACATTGCAACTTTGTGCTAGCAGTCACTTTTTCTTTATCCATTTGATTAAG
CTGAAAAATACAAATTAGTAAAGCTCAAGTTTGTGGCTGGGGGGCTGACACTAATCTAATTAAT
TATGTTTTGGTGGTTCATAACTGTTATGGGTGTGTGGATCATGAAATCTAACTATAAGTCTACA
TGTATTATCTGAGAAATGCATTTACACACTCTATGTAGTGTAAAATCCTGAATAGGTGAACATT
CATATAACATGAAGTTTGTTTCCCTCTTGGTAGCCGTGCTGCATTTCAAGTGCTCCACATTTAC
ATTAGAATTAGATAAGGATAAATTCTTCAGCTGAGTGTTTCGGAATATAAACATCCTGTTAATA
ATAAAATTTTAGTAATGGCAATTGGTATTTTCTTCTGTTTGATTCTGAATGTGCCTGTTACAGA
GCTGCACCTGGTGGTAAAACGACTTATGTTGCTGCGCTCATGAAAAATAGTGGTACATACAGTT
GATGTTTTATTCAAAATTGCTAAATGTTGTCTCTTTAATGTCACATTTGTTTTATTTTACCTTA
GTGAATTTCCTTGACCATGTTGAATATTTAGTCCAGTTGGCTTGGTCAATAGTTTCCCCTGTCT
AAGTTTAGAGCATGGTTGAAAAAATCAGACCTGGCTGGCTATTTGGACTGGTTCAACTGGGATC
AGTGGCCTATCCAGGCCACTGCTGAACAAGGAACCAGGGATAGGTTGAACCGGCATTTAACCTG
TTCAACCTGTTATACAAGAATATTTTTGAGATTTGGACCAAAAACCACTTAGAATTATACTGAA
GGCTATACCATTAAGTCAAATGCTTATTGTTTCAAAATCTTAACTATATTTAATTTTTATTTAA
TCATTTAATGTTTAAATTTAAAAAAAAAAGAAATAAACCTCCCTGTCTAACCAGCCAGGGTTCT
GACTGGTTAGACCTCCAGTTTGGTCTTTTAACCTTGGTTTAGAGAATTTACCTGGTCAGTTAAG
GTATTAGGGACTAAGCGAAGTAAAAAGGAAGAATGATTGGTCTGGATACCTTGATATGTTCACC
ACATCAAAGAGAGCCATGGACTGCTAGGGTCATGTTCCTCTTAGTGGGAAACTGTATATACTAA
GAAGCTATTCTCTTTATGCCAAATTAATTGAATAAACATAAGTAATTATCTCTGATAGTTATGT
ATGCTTTTTGTTCTATATTTCTTTACAGTTGTTCCCGAATTCAGTTTTTGATATTTTGCTGGTA
TTTTGACCAGGAATAATTTATGCAAATGAAATTAGGGAAGCAAGACTGAAGTCACTTACTGCAA
ATTTGCATCGCATGGGTGTAACAAACACAATAGTTTGTAATTATGATGGGAGGGAGGTTAGCAT
CTTTCTGCTTTTCATAAGAATATAATACCAAGCTTGACAATTTGACGGATATGATGTTTCCAGT
TGAAAGGCTTCAAAAGCATAAATTGTTGAAGCCCTTTTCTTTAAGTGCTGCATTTCAAGATGTA
TTGGATTAGTTGTAGGTCAAAAACAAATTGCATCAACTTGTCCTCTCTGTTATCATGAGGATCA
TATGCACTTAGGAGACAAAGCTGTCATTGTCTAATTCTTTTTCTTATTATCTTAACCTTCAGCT
TCCCAAGGTTTTGGGTCAGAATTCAGTCGATAGAGTGTTGTTGGATGCTCCTTGTAGTGGTACC
GGGGTAAGCATCTCTTGTCGCCTTGTTCATCTCTGGCACATCACTCGATTTTTTGTGCTTGAAC
TGAATGATTTCTTCTTTATGGTACAGGTTATAACTAAAGATCCATCGGTTAAGACCTCTAAAAG
TTTGGATGATATACAAAAATGTGCCCATTTGCAGAAGGTACATGTTCTTTCTATGAACTTTTTG
CCATTTTTGGTGTATCTCAGAACTCCAATAATCCTCCTTGATTCAAAGTTGGAATAGAAGGCAA
GGAGTTGATACTTTTGTCATGAGTATCTCTTGCATATTCTAAGAGATTAATCCGCGCAATCTTA
AATCTTTTTGTTTGTAGCAACTGATACTTGCTGCAATTGATATGGTTGATGCAAATTCCAAATC
TGGCGGATACATTGTTTACTCGACATGCTCGATAATGGTTCCAGAGGTTTGTTCAAGGTTGCCC
TTCTGATTTTCTACCATGCGCATTGTCTTCTCTTTTTCTCATTTAGACCCATCTTTCTATAGAA
CGAAGCAGTCAGCGACTATGCACTCAAGAAGAGAGATGTCAAAGTAGTACCGTGTGGACTTGAC
TTTGGAAGTCCTGGGTAGCAATCCCGTTTTTTTTTTTTTTTCATTCAACTTCCTTCTAATTTGA
TCAATGTTCCATTTCTGATGTTGTTTTCTTTCTTTAACCAGATATATCCGGTTTAGGGAGCATC
GGTTTCACACCTCCTTAGAAAACACAAGGCGGTTTTATCCTCATGTCCACAATATGGATGGATT
TTTTGTGGCCAAGGTATATATTGAATTTAAAATGCCAGCATTAACCCTAAACAGATTGCTTACT
TCTTTTTTTTACTCTCGACTTTCTTTAGTTGAAGAAAATGAGCAACGCGAAGAAGAATCCCGTA
AATTCTGAAGATCTAGAAACCGTTGTGCAAACTCAGAGACCGGAGAATACCCCTATAGATAAGG
ACAACACAGAAGAGCTTAAACAAAACTTGAAGAAACAAGGCAATAAAGGGAAAATGTAGAGCTT
AAAGAAGAATGTTTTATCCAGAAATGGAAAGGTAGAATCACCTCCAACATCAAAAACGAAGAAA
AGAACTGAAACTGGAAAGGTAGAGTCGCCTTTGTCATCGAAAAAGAGGAAAAGAAGATTTCCCT
CAAAAGAAGAAATATCTGAAGCAAG
						
					

			
		

Sequences
Splice junction sequence	AAACGAAGAAAAGAACTGAAACTGGAAAGGTAGAGTCGCCTTTGTCATCGAAAAAGAGGAAAAG AAGATTTCCCTCAAAAGAAGAAATATCTGAAGCAAGacagtggttcaagttccacttcaggttc aggttccgattcccattcagatgaaacagatatagaggagaagtccagggctatcgatgaacaa cgtgcgag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ACAGTGGTTCAAGTTCCACTTCAGGTTCAGGTTCCGATTCCCATTCAGATGAAACAGATATAGA GGAGAAGTCCAGGGCTATCGATGAACAACGTGCGAGGGAAGAAGAAGATGCACAAGCTGAGATG GAGCTGAACATTAAAGAAGAGTCTGATGAGTTCAGACTGCCAACAAAAGAGGTTGCCCTTTGAC TTGGATTGTCTTTGCTGTTAGTATCACTTCAATTCTATTAAGTTACTCATATGTCCTCCCATTT GTGGTATCACTCAGGAACTTGAAGCAGAGCAACAACGTCCGCCTGATCTTGCAAATCTTCAGAT GAGAATGAAAGAGAGTGAGTGACTTTTCTGCTAACCGTATTCTTTTAACGGTTAGCCATTTATG ATCTGATTAGCTAAGATTTTATTCATTTATTTTTAGTTGTTCGAGTGCTCTCAAATTTTAAGCA TATGAGGCAAGAAGGAACGACAAGGAAGGATTATATTGACCAACTTAAAATTGATTTGGGTTCT TACTATGGCTACAATGAATTCCTGATCAGGGTTTTGGTTGATGTAATATCTTGTTCCATGTTCT GTAGTTTGCATTTTTTTCTTTTCTTTTTGGAGAAATTTTTTCTGATCAATTATTATATTAACTC CTGTCATCTCTTTTATAGATGTTTCCGGTTGTTGAACTCATGGAACTTATTGAAGCTTTTGAAA AGCCTCGACCTACATGTATCCGGACGAACACTTTAAGGGTGCGAATATACATTCTATGTTTGCT GCCTTTTAGTGTTTGACTTGTTATGCATCTCTGCTCAAACTATTGGCATAATGTCCTTATATAT GCAGACTCGCAGAAGGGATCTGGCCGACGTTCTTTCCAAAAGAGGAGTAGAACTGGATCAATTA AGCAAGTGGTCAAAAGTAAGATCTTTCATGTTTATGATTTTCATTTTTGAATCCTCTAATTTCC AATGGAGTACAAGAGGCATGTTGATTTTATATTTGTAGGTTGGATTGGTGGTGTATAATTCGCA TGTGCCCATTGGTGCCACTCCGGAGTATTTGGCTGGCTTTTACTATGTATGTGCCCTTTCATTG TACTTTTTTTATGTAATGATATAATTATTTAGTAAATATAATTTTTTTGGCACTTTCAGTTATC TTTATTTTTTTTCAATTAACAGATACAAGGTGCAAGCTCCTTTTTGCCTGTTATGGCTCTTGCT CCTCAGGAGAAGGAACGGGTAGTTGATATGGCGTAAGTTGCTCCATTCTGTTTGCTATCCTTAT CTATGCATTGCCTTTTTGTTTGTTTGTTTGTTTGTTTCTTTATTTATTTTACTACCGATATTTA TGATTGAAGAAAATCTCCATGTGAACCATATTCTAGAAATTGAATATTGGGGTTCATAGTTATA TTTTGCAGCGTCCACATTGCAACTTTGTGCTAGCAGTCACTTTTTCTTTATCCATTTGATTAAG CTGAAAAATACAAATTAGTAAAGCTCAAGTTTGTGGCTGGGGGGCTGACACTAATCTAATTAAT TATGTTTTGGTGGTTCATAACTGTTATGGGTGTGTGGATCATGAAATCTAACTATAAGTCTACA TGTATTATCTGAGAAATGCATTTACACACTCTATGTAGTGTAAAATCCTGAATAGGTGAACATT CATATAACATGAAGTTTGTTTCCCTCTTGGTAGCCGTGCTGCATTTCAAGTGCTCCACATTTAC ATTAGAATTAGATAAGGATAAATTCTTCAGCTGAGTGTTTCGGAATATAAACATCCTGTTAATA ATAAAATTTTAGTAATGGCAATTGGTATTTTCTTCTGTTTGATTCTGAATGTGCCTGTTACAGA GCTGCACCTGGTGGTAAAACGACTTATGTTGCTGCGCTCATGAAAAATAGTGGTACATACAGTT GATGTTTTATTCAAAATTGCTAAATGTTGTCTCTTTAATGTCACATTTGTTTTATTTTACCTTA GTGAATTTCCTTGACCATGTTGAATATTTAGTCCAGTTGGCTTGGTCAATAGTTTCCCCTGTCT AAGTTTAGAGCATGGTTGAAAAAATCAGACCTGGCTGGCTATTTGGACTGGTTCAACTGGGATC AGTGGCCTATCCAGGCCACTGCTGAACAAGGAACCAGGGATAGGTTGAACCGGCATTTAACCTG TTCAACCTGTTATACAAGAATATTTTTGAGATTTGGACCAAAAACCACTTAGAATTATACTGAA GGCTATACCATTAAGTCAAATGCTTATTGTTTCAAAATCTTAACTATATTTAATTTTTATTTAA TCATTTAATGTTTAAATTTAAAAAAAAAAGAAATAAACCTCCCTGTCTAACCAGCCAGGGTTCT GACTGGTTAGACCTCCAGTTTGGTCTTTTAACCTTGGTTTAGAGAATTTACCTGGTCAGTTAAG GTATTAGGGACTAAGCGAAGTAAAAAGGAAGAATGATTGGTCTGGATACCTTGATATGTTCACC ACATCAAAGAGAGCCATGGACTGCTAGGGTCATGTTCCTCTTAGTGGGAAACTGTATATACTAA GAAGCTATTCTCTTTATGCCAAATTAATTGAATAAACATAAGTAATTATCTCTGATAGTTATGT ATGCTTTTTGTTCTATATTTCTTTACAGTTGTTCCCGAATTCAGTTTTTGATATTTTGCTGGTA TTTTGACCAGGAATAATTTATGCAAATGAAATTAGGGAAGCAAGACTGAAGTCACTTACTGCAA ATTTGCATCGCATGGGTGTAACAAACACAATAGTTTGTAATTATGATGGGAGGGAGGTTAGCAT CTTTCTGCTTTTCATAAGAATATAATACCAAGCTTGACAATTTGACGGATATGATGTTTCCAGT TGAAAGGCTTCAAAAGCATAAATTGTTGAAGCCCTTTTCTTTAAGTGCTGCATTTCAAGATGTA TTGGATTAGTTGTAGGTCAAAAACAAATTGCATCAACTTGTCCTCTCTGTTATCATGAGGATCA TATGCACTTAGGAGACAAAGCTGTCATTGTCTAATTCTTTTTCTTATTATCTTAACCTTCAGCT TCCCAAGGTTTTGGGTCAGAATTCAGTCGATAGAGTGTTGTTGGATGCTCCTTGTAGTGGTACC GGGGTAAGCATCTCTTGTCGCCTTGTTCATCTCTGGCACATCACTCGATTTTTTGTGCTTGAAC TGAATGATTTCTTCTTTATGGTACAGGTTATAACTAAAGATCCATCGGTTAAGACCTCTAAAAG TTTGGATGATATACAAAAATGTGCCCATTTGCAGAAGGTACATGTTCTTTCTATGAACTTTTTG CCATTTTTGGTGTATCTCAGAACTCCAATAATCCTCCTTGATTCAAAGTTGGAATAGAAGGCAA GGAGTTGATACTTTTGTCATGAGTATCTCTTGCATATTCTAAGAGATTAATCCGCGCAATCTTA AATCTTTTTGTTTGTAGCAACTGATACTTGCTGCAATTGATATGGTTGATGCAAATTCCAAATC TGGCGGATACATTGTTTACTCGACATGCTCGATAATGGTTCCAGAGGTTTGTTCAAGGTTGCCC TTCTGATTTTCTACCATGCGCATTGTCTTCTCTTTTTCTCATTTAGACCCATCTTTCTATAGAA CGAAGCAGTCAGCGACTATGCACTCAAGAAGAGAGATGTCAAAGTAGTACCGTGTGGACTTGAC TTTGGAAGTCCTGGGTAGCAATCCCGTTTTTTTTTTTTTTTCATTCAACTTCCTTCTAATTTGA TCAATGTTCCATTTCTGATGTTGTTTTCTTTCTTTAACCAGATATATCCGGTTTAGGGAGCATC GGTTTCACACCTCCTTAGAAAACACAAGGCGGTTTTATCCTCATGTCCACAATATGGATGGATT TTTTGTGGCCAAGGTATATATTGAATTTAAAATGCCAGCATTAACCCTAAACAGATTGCTTACT TCTTTTTTTTACTCTCGACTTTCTTTAGTTGAAGAAAATGAGCAACGCGAAGAAGAATCCCGTA AATTCTGAAGATCTAGAAACCGTTGTGCAAACTCAGAGACCGGAGAATACCCCTATAGATAAGG ACAACACAGAAGAGCTTAAACAAAACTTGAAGAAACAAGGCAATAAAGGGAAAATGTAGAGCTT AAAGAAGAATGTTTTATCCAGAAATGGAAAGGTAGAATCACCTCCAACATCAAAAACGAAGAAA AGAACTGAAACTGGAAAGGTAGAGTCGCCTTTGTCATCGAAAAAGAGGAAAAGAAGATTTCCCT CAAAAGAAGAAATATCTGAAGCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.434938162

Conservation Information
Conserved circRNAs	NA
PMCS	0.434938162

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							41267271-41271421(-)
						
						Potential amino acid sequence
						
							MFSSISACASSSSLARCSSIALDFSSISVSSEWESEPEPEVELEPLSCFRYFFF*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	41267271-41271421(-)
Potential amino acid sequence	MFSSISACASSSSLARCSSIALDFSSISVSSEWESEPEPEVELEPLSCFRYFFF*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.013G151300_circ_g.1

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