Detail information of Os05g0566300_circ_g.1


General Information
CircRNA Name Os05g0566300_circ_g.1
ID in PlantcircBase osa_circ_042182
Alias NA
Organism Oryza sativa
Position chr5: 28183344-28183425  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0566300
Parent gene annotation PRC-barrel domain containing protein. (Os05t0566300-01)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GG-TG
Number of exons covered Os05t0566300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGAGTACGATGACGAGGAGGAGGAAGAGCTAGTGGTGGTgcgccgcgctgctctccagcctc
ggcgacgcgcaggaggag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 82
Transcript exons: 28183344-28183425
GCGCCGCGCTGCTCTCCAGCCTCGGCGACGCGCAGGAGGAGGAGGAGTACGATGACGAGGAGGA
GGAAGAGCTAGTGGTGGT

Genomic sequence GCGCCGCGCTGCTCTCCAGCCTCGGCGACGCGCAGGAGGAGGAGGAGTACGATGACGAGGAGGA
GGAAGAGCTAGTGGTGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.34166626
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study