Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G15790_circ_g.1 |
ID in PlantcircBase | ath_circ_002811 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5439285-5439837 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G15790 |
Parent gene annotation |
unknown protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G15790.1:3 AT1G15790.4:3 AT1G15790.2:3 AT1G15790.5:3 AT1G15790.3:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.11814346 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
5439821-5439287(-) |
Potential amino acid sequence |
MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL RQICMKMLNMETKSQNAAGSSSADDNTPPLVPEKRTNTMDTTGDWRTQFPSASRSRIVNKIMET QLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQICMKMLNMETKSQNAAGSSSADDN TPPLVPEKRTNTMDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEK LFNNASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEKRTNTMDTTGDWRTQFPSA SRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQICMKMLNMETKS QNAAGSSSADDNTPPLVP(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |