Plant Circular RNA Database

Detail information of Os06g0247651_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os06g0247651_circ_g.4
					
						ID in PlantcircBase
						osa_circ_030372
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 7651461-7653409  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0247500						
					
						Parent gene annotation
						
							Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) be
ta subunit, Regulation of carbon metabolism during grain filling
 (Os06t0247500-01);Similar to pyrophosphate--fructose 6-phosphat
e 1-phosphotransferase beta subunit. (Os06t0247500-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0247651_circ_g.5 Os06g0247651_circ_g.6 Os06g0247651_circ_g.7 Os06g0247651_circ_g.8 Os06g0247651_circ_g.9 Os06g0247651_circ_g.10 Os06g0247651_circ_g.11 						
					
						Support reads
						3
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0247651-00:6
Os06t0247500-01:6
Os06t0247651-00:6

General Information
CircRNA Name	Os06g0247651_circ_g.4
ID in PlantcircBase	osa_circ_030372
Alias	NA
Organism	Oryza sativa
Position	chr6: 7651461-7653409 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0247500
Parent gene annotation	Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) be ta subunit, Regulation of carbon metabolism during grain filling (Os06t0247500-01);Similar to pyrophosphate--fructose 6-phosphat e 1-phosphotransferase beta subunit. (Os06t0247500-02)
Parent gene strand	-
Alternative splicing	Os06g0247651_circ_g.5 Os06g0247651_circ_g.6 Os06g0247651_circ_g.7 Os06g0247651_circ_g.8 Os06g0247651_circ_g.9 Os06g0247651_circ_g.10 Os06g0247651_circ_g.11
Support reads	3
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0247651-00:6 Os06t0247500-01:6 Os06t0247651-00:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAATCCGCAGTGAGCTCAACGTACTTGCACTTCATGACTCCAGCTGGACCTCCCTTGAATCCAT
ACATGACGGATCCTTTTGCATATTCCTGCAGGTAATctcttctccaatgagtgcaacattagga
tgtgtttgcagagcacactccaatgtaatgtgagaagcagcacgtcccataagcctcacaacta
catgaaca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCTTCTCCAATGAGTGCAACATTAGGATGTGTTTGCAGAGCACACTCCAATGTAATGTGAGAA
GCAGCACGTCCCATAAGCCTCACAACTACATGAACATAACAAATACTTATTAGTATTGTGTCAG
AAATAGACAAAATAATGTTAAATTAACCATCTGCAGAAGTTGACACTCAAGGATTTTATATGTT
AGCAGCATGTTGTTACAGCATTATGAGGATGTTTGAGGCCTTGTTGTATAATGTACGAAAAAAT
AAATACTACTTTACTAGGTTGCTGAGCATGTAATGACCTTCTTCAATTTAGTTATGGATAAACT
AAATGACAGTATACTTTAATAGCCATGTACAGCTACTGTTGGCAATTATTATCCATGATCTCTT
CAAACTAAACATAGTTTGCTCCTATCAACTCTCTTTCCATGTTTAGGAAAACAAAAATCATAGT
TTGGCATATGTCTGACAACCAAAACAGAAACTTACAGTGGTAGTACTTCCCGGTTGAGCGTGCA
TCAGTCATAACATTACCAATCATTTCAGAGTATATCTGAAAAAGAAGATGGATCAATCGTTAAC
TTTTTTGAGGAAAAATCGTCAACTTGTTATTATTGCCGTGATGATTTTCATATTATGTGCAAAA
TGTCCTAATTTCACCATGTGCAGTTGAGCAAGTGCATCAAGGTCATAAGGGTGAAAACTTCACA
ATCTACAGTAGAATTAGCTGAAATTTTGAAAACTGATGCACAAGGATCAAGAACCTGATACCTT
GCAAGCAGTGTCAAACCCAAAGCTTGTTGGAACCTCCTTGCATTTCAGATCTCCATCAATAGTC
TTTGGGCAACCAATGACACGAGTTTTCATGTTCTTCCCCCTACAAAGTTAAACAATCACTCACT
TGTCAACAAGCATATAGTTAATATTGCCAATAAAACTATCGAGAATAATATCTAGATTCTCTAT
GTTGCAGAATTCAGTTAATGGCTCAATGCTATTGCAGACTTAATGCTTGTTTAACAGAAAACAT
CATGCAGAAAATATGCTTCAGCAACATACAACAAAAATAAGAGCTTTTTGTTACTGTTTGGAAA
ACTTTTTTCTGTATTTCCTTTCGGAATTGACCTGTTTACAGTTGACAGAGCATCAACAGTACAC
AAAGGTCTTTGTCAACAGCAACTAAAGAAAATTGCCTAAGAAGCAAAAGAACAGGGTTACACAT
ATTAGGGGCCAACCTGAAGTACTCAGCAAGAAGGCATGCGTTTGTGTTTGAATCATCACCACCA
ATGACAACAAGCCCATCCAAATCAAGTTTGTTTACAGTGTCTTCAGCTTGCTTGAACTGCTCAA
ATACATGACAGAATTTAAAATAAGAAAATGCTAGTGAAACTAGGCAACAAAATAGCCAAATACC
CTGAAAGGCAGATAAAGGGATTAAATAAGCATTTGCACATAAAAGCGCAAAGATATACCTGCTC
TGGTGTTTCAATCTTGTCCCTACCACTGCAGATCATATCAAATCCACCCTATCAAAAAGAGAAA
CAAAATTAAAATCGTACCTGAAATAAGAGAGCCCCTTAAAAAGGAAAAGTGTGTATATTTCATG
CAGCGACCTAACCATCAGCAGTACTTGACACCTAGCATGATCATACTCCAAAAAAGAAAATGAG
AATGTAATTATTTGCACCAAAAAAAGGGTCTTATCATATTTTCTACACCAGAACCTTACCTAAC
ACCACCTACTAAACTAACATGATTTACAGAAAATCAGAGAATAGGCACCTGTCGAATTTTCGAC
CCAATAGCATGCTTAGTGAATCTAAGTTGCTATACCTGGTTTCTGTAGGGGTACACATAATCCG
CAGTGAGCTCAACGTACTTGCACTTCATGACTCCAGCTGGACCTCCCTTGAATCCATACATGAC
GGATCCTTTTGCATATTCCTGCAGGTAAT
						
					

			
		

Sequences
Splice junction sequence	TAATCCGCAGTGAGCTCAACGTACTTGCACTTCATGACTCCAGCTGGACCTCCCTTGAATCCAT ACATGACGGATCCTTTTGCATATTCCTGCAGGTAATctcttctccaatgagtgcaacattagga tgtgtttgcagagcacactccaatgtaatgtgagaagcagcacgtcccataagcctcacaacta catgaaca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCTTCTCCAATGAGTGCAACATTAGGATGTGTTTGCAGAGCACACTCCAATGTAATGTGAGAA GCAGCACGTCCCATAAGCCTCACAACTACATGAACATAACAAATACTTATTAGTATTGTGTCAG AAATAGACAAAATAATGTTAAATTAACCATCTGCAGAAGTTGACACTCAAGGATTTTATATGTT AGCAGCATGTTGTTACAGCATTATGAGGATGTTTGAGGCCTTGTTGTATAATGTACGAAAAAAT AAATACTACTTTACTAGGTTGCTGAGCATGTAATGACCTTCTTCAATTTAGTTATGGATAAACT AAATGACAGTATACTTTAATAGCCATGTACAGCTACTGTTGGCAATTATTATCCATGATCTCTT CAAACTAAACATAGTTTGCTCCTATCAACTCTCTTTCCATGTTTAGGAAAACAAAAATCATAGT TTGGCATATGTCTGACAACCAAAACAGAAACTTACAGTGGTAGTACTTCCCGGTTGAGCGTGCA TCAGTCATAACATTACCAATCATTTCAGAGTATATCTGAAAAAGAAGATGGATCAATCGTTAAC TTTTTTGAGGAAAAATCGTCAACTTGTTATTATTGCCGTGATGATTTTCATATTATGTGCAAAA TGTCCTAATTTCACCATGTGCAGTTGAGCAAGTGCATCAAGGTCATAAGGGTGAAAACTTCACA ATCTACAGTAGAATTAGCTGAAATTTTGAAAACTGATGCACAAGGATCAAGAACCTGATACCTT GCAAGCAGTGTCAAACCCAAAGCTTGTTGGAACCTCCTTGCATTTCAGATCTCCATCAATAGTC TTTGGGCAACCAATGACACGAGTTTTCATGTTCTTCCCCCTACAAAGTTAAACAATCACTCACT TGTCAACAAGCATATAGTTAATATTGCCAATAAAACTATCGAGAATAATATCTAGATTCTCTAT GTTGCAGAATTCAGTTAATGGCTCAATGCTATTGCAGACTTAATGCTTGTTTAACAGAAAACAT CATGCAGAAAATATGCTTCAGCAACATACAACAAAAATAAGAGCTTTTTGTTACTGTTTGGAAA ACTTTTTTCTGTATTTCCTTTCGGAATTGACCTGTTTACAGTTGACAGAGCATCAACAGTACAC AAAGGTCTTTGTCAACAGCAACTAAAGAAAATTGCCTAAGAAGCAAAAGAACAGGGTTACACAT ATTAGGGGCCAACCTGAAGTACTCAGCAAGAAGGCATGCGTTTGTGTTTGAATCATCACCACCA ATGACAACAAGCCCATCCAAATCAAGTTTGTTTACAGTGTCTTCAGCTTGCTTGAACTGCTCAA ATACATGACAGAATTTAAAATAAGAAAATGCTAGTGAAACTAGGCAACAAAATAGCCAAATACC CTGAAAGGCAGATAAAGGGATTAAATAAGCATTTGCACATAAAAGCGCAAAGATATACCTGCTC TGGTGTTTCAATCTTGTCCCTACCACTGCAGATCATATCAAATCCACCCTATCAAAAAGAGAAA CAAAATTAAAATCGTACCTGAAATAAGAGAGCCCCTTAAAAAGGAAAAGTGTGTATATTTCATG CAGCGACCTAACCATCAGCAGTACTTGACACCTAGCATGATCATACTCCAAAAAAGAAAATGAG AATGTAATTATTTGCACCAAAAAAAGGGTCTTATCATATTTTCTACACCAGAACCTTACCTAAC ACCACCTACTAAACTAACATGATTTACAGAAAATCAGAGAATAGGCACCTGTCGAATTTTCGAC CCAATAGCATGCTTAGTGAATCTAAGTTGCTATACCTGGTTTCTGTAGGGGTACACATAATCCG CAGTGAGCTCAACGTACTTGCACTTCATGACTCCAGCTGGACCTCCCTTGAATCCATACATGAC GGATCCTTTTGCATATTCCTGCAGGTAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.130086386

Conservation Information
Conserved circRNAs	NA
PMCS	0.130086386

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							7651485-7653327(-)
7653379-7653343(-)
						
						Potential amino acid sequence
						
							MLHSLEKRLPAGICKRIRHVWIQGRSSWSHEVQVR*(-)
MYGFKGGPAGVMKCKYVELTADYVYPYRNQGGFDMICSGRDKIETPEQFKQAEDTVNKLDLDGL
VVIGGDDSNTNACLLAEYFRGKNMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIYSEMIGNV
MTDARSTGKYYHFVRLMGRAASHITLECALQTHPNVALIGEEITCRNMQKDPSCMDSREVQLES
*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	7651485-7653327(-) 7653379-7653343(-)
Potential amino acid sequence	MLHSLEKRLPAGICKRIRHVWIQGRSSWSHEVQVR(-) MYGFKGGPAGVMKCKYVELTADYVYPYRNQGGFDMICSGRDKIETPEQFKQAEDTVNKLDLDGL VVIGGDDSNTNACLLAEYFRGKNMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIYSEMIGNV MTDARSTGKYYHFVRLMGRAASHITLECALQTHPNVALIGEEITCRNMQKDPSCMDSREVQLES (-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0247651_circ_g.4

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