Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d035089_circ_g.2 |
ID in PlantcircBase | zma_circ_008875 |
Alias | Zm06circ00002, zma_circ_0002092 |
Organism | Zea mays |
Position | chr6: 4692452-4692808 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d035089 |
Parent gene annotation |
pleckstrin homology (PH) domain-containing protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d035089_T003:2 Zm00001d035089_T005:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.233615864 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4692747-4692454(-) |
Potential amino acid sequence |
MKDRTEVSAFVDLLVNYNNIDKVMWEPFVEPSRFQLNMLRKCGDCGLDISPSTDVCLSSSKQLN LNISEPLIEWSSHGPVIETLLKNLTVQFSQMKDRTEVSAFVDLLVNYNNIDKVMWEPFVEPSRF QLNMLRKCGDCGLDISPSTDVCLSSSKQLNLNISEPLIEWSSHGPVIETLLKNLTVQFSQMKDR TEVSAFVDLLVNYNNIDKVMWEPFVEPSRFQLNMLRKCGDCGLDISPSTDVCLSSSKQLNLNIS EPLIEWSSHGPVIETLLKNLTVQFSQMKDRTEVSAFVDLLVNYNNIDKVMWEPFVEPSRFQLNM LRKCGDCGLDISPSTDVCLSSSKQLNLNISEPLIE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b |