Detail information of AT3G01120_circ_g.3


General Information
CircRNA Name AT3G01120_circ_g.3
ID in PlantcircBase ath_circ_019023
Alias NA
Organism Arabidpsis thaliana
Position chr3: 40043-40129  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT3G01120
Parent gene annotation MTO1
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G01120.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGAAACCAACTTCAGTGAACCACAGATGCATCCAGCAAGAACtgggttaagtgttcctcccaa
cacatgatgcagattgcgaattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGGTTAAGTGTTCCTCCCAACACATGATGCAGATTGCGAATTTCTGAAACCAACTTCAGTGAA
CCACAGATGCATCCAGCAAGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.160916667
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017