Plant Circular RNA Database

Detail information of Solyc04g071990.2_circ_g.1

			
						 General Information
					
						CircRNA Name
						Solyc04g071990.2_circ_g.1
					
						ID in PlantcircBase
						sly_circ_001482
					
						Alias
						4:56614606|56616476
					
						Organism
						
							Solanum lycopersicum						
					
						Position
						
							chr4: 59021236-59023106  JBrowse»						
					
						Reference genome
						
							SL2.50.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Solyc04g071990.2						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						5
					
						Tissues
						fruit
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Solyc04g071990.2.1:2

General Information
CircRNA Name	Solyc04g071990.2_circ_g.1
ID in PlantcircBase	sly_circ_001482
Alias	4:56614606\|56616476
Organism	Solanum lycopersicum
Position	chr4: 59021236-59023106 JBrowse»
Reference genome	SL2.50.38
Type	e-circRNA
Identification method	CIRI
Parent gene	Solyc04g071990.2
Parent gene annotation	protein_coding
Parent gene strand	-
Alternative splicing	NA
Support reads	5
Tissues	fruit
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Solyc04g071990.2.1:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAAGTAAAGCAGCTGCAGCATCCGCAGCAATGCCTGCTCTCATGGACATGGCAATTCCAATTGC
ACGCAAAAAATGCAAATGCATCCAATTCCTAGGAAGctgtctccatccctgctgagcggaagtg
ctttctgcacttggttgtatttcaggagatgcaattaacttgtgccacagcaatgagacaacag
aaaaacat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1746
Transcript exons: 59021236-59022771,59022897-59023106
CTGTCTCCATCCCTGCTGAGCGGAAGTGCTTTCTGCACTTGGTTGTATTTCAGGAGATGCAATT
AACTTGTGCCACAGCAATGAGACAACAGAAAAACATAATTCCTCATTCTCCGTGAGTACGGACT
TTATAAGATCTTCAGCATTGCAATTGAATCCTATAAGCCTGTCCATTGTCAGAAAGTTCGCCAA
ATCTGAAGCATCTAAAGGGAAACTTGCGATCCCTTTACCACTGGTGCACTGTGCAGCCTCGCTT
GAGTGTAAAACTTTCTCACTCATAGTTAAAGTTTTACAATCAGTTGAGTGTTTGCACTCGAGCA
ATGATGACTGTTCTGCAGTTAAGCAGGTGCAATTGCTATATTTATTATGTTTTTTCCCATTCAA
GCCCGAGCTTCTTTTCTTAAGAACAGGAACAGGTATTAGGTGTGCTTCCAATGGTTCGGCCTTG
TCGACAATTGATGCAACAACTTTACTATGGATATCAATGAGGTTATACAGTGAAGATGCTCTGG
AGAGAATTTCATTATCCCACTTACACCGTATTAAGACCGAAAGAGCATGCATGCAAGCCTTGGA
GTGTCTAAACAGATCAGAAATATGAGCAGCTACCATAGCTGCAGCAACTATCTCATTTGAGCTG
TAGCTCCATGAAGTTCCAATAGATGATGGTTTCAAAGAGAAAAGAGCCTCCAGAATTGTCAATA
TCCTCCGAGTGTGACAGACAGCAGAATGAATCCCATTTTTTAACTCCATAGACGAATCATTTGC
ATGCTTTGCAGCAACCAGGATGGATTTTGGATCCGAATAATTACTCCCTCTTGAAAGCAAAGGA
AAGAGTTGAAGTTCACATGAAAGAGCACAGACAGCAGCAAGAACATAAGAATCAAATGCTGAAA
CAGGTCCTTGTTTTTTCAATTTCTTGGGAATTTTTTCTTTCTGCTTTCCACCAACTTCCAGCGA
TTCTGAACCCATTGCACTAACATGGTGAGGATCTTTACCTACAGGCCTTCTGCTCCCATTTGTT
TTTGCTTCATGGGTGACACATACAGTTAATACAACAAAAAGAAGCCGAGAAGCAAGCTCTACAG
AAGCACACGACTCCAAGAACAATGAATGAACCATTGTTCGCAATTCTGCCACAGCAAGGTTTTT
GGAGGCAGGTCCAAACATGTTGTATCTGTTTCTTCTGATTTCCTCTCTAGAGGACTCAGATGGG
AATGTTCTCTGAAGAATTGCTTCTACTGTGGCCACAAATATTTTCATGAGGCAAGTTTCAGATG
GGCTCCCACGAGGAAGATACTCAAGAACCTTTAGTAGTGGCATATACAGGTTCCATGATAAAAT
AGGTGGTAGCAGAGGGGTGGCAACTATAATTTCAGGTAGATCAACAGCTGATGAAGTCAAAGGA
ATCAAGCCATAAGCAGCTTCCCATATGGTACATATTCTCCATTCAACCTCAGGGCCATGTGCAC
AAAGCATTGATGCAATCCCTTGCGCAGTGGCTTCAACTGTGGCTTCTGCTAAAGGCACTTGTCT
CTGCTTTTTATTGCATGAAATATAGCCACCCAGTGGTTCGTGTTGAACTTCAATTCCTTCAACT
TGCCTTAATGGAGGAAAGAGCAGAGCAGGCTGTGAAAGTACTCGGAAAAGTAAAGCAGCTGCAG
CATCCGCAGCAATGCCTGCTCTCATGGACATGGCAATTCCAATTGCACGCAAAAAATGCAAATG
CATCCAATTCCTAGGAAG
						
					

						Genomic sequence
						
							CTGTCTCCATCCCTGCTGAGCGGAAGTGCTTTCTGCACTTGGTTGTATTTCAGGAGATGCAATT
AACTTGTGCCACAGCAATGAGACAACAGAAAAACATAATTCCTCATTCTCCGTGAGTACGGACT
TTATAAGATCTTCAGCATTGCAATTGAATCCTATAAGCCTGTCCATTGTCAGAAAGTTCGCCAA
ATCTGAAGCATCTAAAGGGAAACTTGCGATCCCTTTACCACTGGTGCACTGTGCAGCCTCGCTT
GAGTGTAAAACTTTCTCACTCATAGTTAAAGTTTTACAATCAGTTGAGTGTTTGCACTCGAGCA
ATGATGACTGTTCTGCAGTTAAGCAGGTGCAATTGCTATATTTATTATGTTTTTTCCCATTCAA
GCCCGAGCTTCTTTTCTTAAGAACAGGAACAGGTATTAGGTGTGCTTCCAATGGTTCGGCCTTG
TCGACAATTGATGCAACAACTTTACTATGGATATCAATGAGGTTATACAGTGAAGATGCTCTGG
AGAGAATTTCATTATCCCACTTACACCGTATTAAGACCGAAAGAGCATGCATGCAAGCCTTGGA
GTGTCTAAACAGATCAGAAATATGAGCAGCTACCATAGCTGCAGCAACTATCTCATTTGAGCTG
TAGCTCCATGAAGTTCCAATAGATGATGGTTTCAAAGAGAAAAGAGCCTCCAGAATTGTCAATA
TCCTCCGAGTGTGACAGACAGCAGAATGAATCCCATTTTTTAACTCCATAGACGAATCATTTGC
ATGCTTTGCAGCAACCAGGATGGATTTTGGATCCGAATAATTACTCCCTCTTGAAAGCAAAGGA
AAGAGTTGAAGTTCACATGAAAGAGCACAGACAGCAGCAAGAACATAAGAATCAAATGCTGAAA
CAGGTCCTTGTTTTTTCAATTTCTTGGGAATTTTTTCTTTCTGCTTTCCACCAACTTCCAGCGA
TTCTGAACCCATTGCACTAACATGGTGAGGATCTTTACCTACAGGCCTTCTGCTCCCATTTGTT
TTTGCTTCATGGGTGACACATACAGTTAATACAACAAAAAGAAGCCGAGAAGCAAGCTCTACAG
AAGCACACGACTCCAAGAACAATGAATGAACCATTGTTCGCAATTCTGCCACAGCAAGGTTTTT
GGAGGCAGGTCCAAACATGTTGTATCTGTTTCTTCTGATTTCCTCTCTAGAGGACTCAGATGGG
AATGTTCTCTGAAGAATTGCTTCTACTGTGGCCACAAATATTTTCATGAGGCAAGTTTCAGATG
GGCTCCCACGAGGAAGATACTCAAGAACCTTTAGTAGTGGCATATACAGGTTCCATGATAAAAT
AGGTGGTAGCAGAGGGGTGGCAACTATAATTTCAGGTAGATCAACAGCTGATGAAGTCAAAGGA
ATCAAGCCATAAGCAGCTTCCCATATGGTACATATTCTCCATTCAACCTCAGGGCCATGTGCAC
AAAGCATTGATGCAATCCCTTGCGCAGTGGCTTCAACTGTGGCTTCTGCTAAAGGCACTTGTCT
CTGAAAAAAATTTCATGATTGATAGTCACTATCAAAACCAACTACTTGACAAATTTGGAAGGAT
TCTGCAGAAAGTCCAGATATACCACAAACATAGCATTCAATTTTCAAACCAATGAATATACCTG
CTTTTTATTGCATGAAATATAGCCACCCAGTGGTTCGTGTTGAACTTCAATTCCTTCAACTTGC
CTTAATGGAGGAAAGAGCAGAGCAGGCTGTGAAAGTACTCGGAAAAGTAAAGCAGCTGCAGCAT
CCGCAGCAATGCCTGCTCTCATGGACATGGCAATTCCAATTGCACGCAAAAAATGCAAATGCAT
CCAATTCCTAGGAAG
						
					

			
		

Sequences
Splice junction sequence	AAAGTAAAGCAGCTGCAGCATCCGCAGCAATGCCTGCTCTCATGGACATGGCAATTCCAATTGC ACGCAAAAAATGCAAATGCATCCAATTCCTAGGAAGctgtctccatccctgctgagcggaagtg ctttctgcacttggttgtatttcaggagatgcaattaacttgtgccacagcaatgagacaacag aaaaacat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1746 Transcript exons: 59021236-59022771,59022897-59023106 CTGTCTCCATCCCTGCTGAGCGGAAGTGCTTTCTGCACTTGGTTGTATTTCAGGAGATGCAATT AACTTGTGCCACAGCAATGAGACAACAGAAAAACATAATTCCTCATTCTCCGTGAGTACGGACT TTATAAGATCTTCAGCATTGCAATTGAATCCTATAAGCCTGTCCATTGTCAGAAAGTTCGCCAA ATCTGAAGCATCTAAAGGGAAACTTGCGATCCCTTTACCACTGGTGCACTGTGCAGCCTCGCTT GAGTGTAAAACTTTCTCACTCATAGTTAAAGTTTTACAATCAGTTGAGTGTTTGCACTCGAGCA ATGATGACTGTTCTGCAGTTAAGCAGGTGCAATTGCTATATTTATTATGTTTTTTCCCATTCAA GCCCGAGCTTCTTTTCTTAAGAACAGGAACAGGTATTAGGTGTGCTTCCAATGGTTCGGCCTTG TCGACAATTGATGCAACAACTTTACTATGGATATCAATGAGGTTATACAGTGAAGATGCTCTGG AGAGAATTTCATTATCCCACTTACACCGTATTAAGACCGAAAGAGCATGCATGCAAGCCTTGGA GTGTCTAAACAGATCAGAAATATGAGCAGCTACCATAGCTGCAGCAACTATCTCATTTGAGCTG TAGCTCCATGAAGTTCCAATAGATGATGGTTTCAAAGAGAAAAGAGCCTCCAGAATTGTCAATA TCCTCCGAGTGTGACAGACAGCAGAATGAATCCCATTTTTTAACTCCATAGACGAATCATTTGC ATGCTTTGCAGCAACCAGGATGGATTTTGGATCCGAATAATTACTCCCTCTTGAAAGCAAAGGA AAGAGTTGAAGTTCACATGAAAGAGCACAGACAGCAGCAAGAACATAAGAATCAAATGCTGAAA CAGGTCCTTGTTTTTTCAATTTCTTGGGAATTTTTTCTTTCTGCTTTCCACCAACTTCCAGCGA TTCTGAACCCATTGCACTAACATGGTGAGGATCTTTACCTACAGGCCTTCTGCTCCCATTTGTT TTTGCTTCATGGGTGACACATACAGTTAATACAACAAAAAGAAGCCGAGAAGCAAGCTCTACAG AAGCACACGACTCCAAGAACAATGAATGAACCATTGTTCGCAATTCTGCCACAGCAAGGTTTTT GGAGGCAGGTCCAAACATGTTGTATCTGTTTCTTCTGATTTCCTCTCTAGAGGACTCAGATGGG AATGTTCTCTGAAGAATTGCTTCTACTGTGGCCACAAATATTTTCATGAGGCAAGTTTCAGATG GGCTCCCACGAGGAAGATACTCAAGAACCTTTAGTAGTGGCATATACAGGTTCCATGATAAAAT AGGTGGTAGCAGAGGGGTGGCAACTATAATTTCAGGTAGATCAACAGCTGATGAAGTCAAAGGA ATCAAGCCATAAGCAGCTTCCCATATGGTACATATTCTCCATTCAACCTCAGGGCCATGTGCAC AAAGCATTGATGCAATCCCTTGCGCAGTGGCTTCAACTGTGGCTTCTGCTAAAGGCACTTGTCT CTGCTTTTTATTGCATGAAATATAGCCACCCAGTGGTTCGTGTTGAACTTCAATTCCTTCAACT TGCCTTAATGGAGGAAAGAGCAGAGCAGGCTGTGAAAGTACTCGGAAAAGTAAAGCAGCTGCAG CATCCGCAGCAATGCCTGCTCTCATGGACATGGCAATTCCAATTGCACGCAAAAAATGCAAATG CATCCAATTCCTAGGAAG
Genomic sequence	CTGTCTCCATCCCTGCTGAGCGGAAGTGCTTTCTGCACTTGGTTGTATTTCAGGAGATGCAATT AACTTGTGCCACAGCAATGAGACAACAGAAAAACATAATTCCTCATTCTCCGTGAGTACGGACT TTATAAGATCTTCAGCATTGCAATTGAATCCTATAAGCCTGTCCATTGTCAGAAAGTTCGCCAA ATCTGAAGCATCTAAAGGGAAACTTGCGATCCCTTTACCACTGGTGCACTGTGCAGCCTCGCTT GAGTGTAAAACTTTCTCACTCATAGTTAAAGTTTTACAATCAGTTGAGTGTTTGCACTCGAGCA ATGATGACTGTTCTGCAGTTAAGCAGGTGCAATTGCTATATTTATTATGTTTTTTCCCATTCAA GCCCGAGCTTCTTTTCTTAAGAACAGGAACAGGTATTAGGTGTGCTTCCAATGGTTCGGCCTTG TCGACAATTGATGCAACAACTTTACTATGGATATCAATGAGGTTATACAGTGAAGATGCTCTGG AGAGAATTTCATTATCCCACTTACACCGTATTAAGACCGAAAGAGCATGCATGCAAGCCTTGGA GTGTCTAAACAGATCAGAAATATGAGCAGCTACCATAGCTGCAGCAACTATCTCATTTGAGCTG TAGCTCCATGAAGTTCCAATAGATGATGGTTTCAAAGAGAAAAGAGCCTCCAGAATTGTCAATA TCCTCCGAGTGTGACAGACAGCAGAATGAATCCCATTTTTTAACTCCATAGACGAATCATTTGC ATGCTTTGCAGCAACCAGGATGGATTTTGGATCCGAATAATTACTCCCTCTTGAAAGCAAAGGA AAGAGTTGAAGTTCACATGAAAGAGCACAGACAGCAGCAAGAACATAAGAATCAAATGCTGAAA CAGGTCCTTGTTTTTTCAATTTCTTGGGAATTTTTTCTTTCTGCTTTCCACCAACTTCCAGCGA TTCTGAACCCATTGCACTAACATGGTGAGGATCTTTACCTACAGGCCTTCTGCTCCCATTTGTT TTTGCTTCATGGGTGACACATACAGTTAATACAACAAAAAGAAGCCGAGAAGCAAGCTCTACAG AAGCACACGACTCCAAGAACAATGAATGAACCATTGTTCGCAATTCTGCCACAGCAAGGTTTTT GGAGGCAGGTCCAAACATGTTGTATCTGTTTCTTCTGATTTCCTCTCTAGAGGACTCAGATGGG AATGTTCTCTGAAGAATTGCTTCTACTGTGGCCACAAATATTTTCATGAGGCAAGTTTCAGATG GGCTCCCACGAGGAAGATACTCAAGAACCTTTAGTAGTGGCATATACAGGTTCCATGATAAAAT AGGTGGTAGCAGAGGGGTGGCAACTATAATTTCAGGTAGATCAACAGCTGATGAAGTCAAAGGA ATCAAGCCATAAGCAGCTTCCCATATGGTACATATTCTCCATTCAACCTCAGGGCCATGTGCAC AAAGCATTGATGCAATCCCTTGCGCAGTGGCTTCAACTGTGGCTTCTGCTAAAGGCACTTGTCT CTGAAAAAAATTTCATGATTGATAGTCACTATCAAAACCAACTACTTGACAAATTTGGAAGGAT TCTGCAGAAAGTCCAGATATACCACAAACATAGCATTCAATTTTCAAACCAATGAATATACCTG CTTTTTATTGCATGAAATATAGCCACCCAGTGGTTCGTGTTGAACTTCAATTCCTTCAACTTGC CTTAATGGAGGAAAGAGCAGAGCAGGCTGTGAAAGTACTCGGAAAAGTAAAGCAGCTGCAGCAT CCGCAGCAATGCCTGCTCTCATGGACATGGCAATTCCAATTGCACGCAAAAAATGCAAATGCAT CCAATTCCTAGGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.804306962

Conservation Information
Conserved circRNAs	NA
PMCS	0.804306962

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							59023081-59021298(+)
59023037-59021251(+)
59023093-59021238(-)
						
					

						Potential amino acid sequence
						
							MQMHPIPRKLSPSLLSGSAFCTWLYFRRCN*(+)
MPALMDMAIPIARKKCKCIQFLGSCLHPC*(+)
MHLHFLRAIGIAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVEGIEVQHEPLGGYISCNKK
QRQVPLAEATVEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLTSSAVDLPEIIVATPLLP
PILSWNLYMPLLKVLEYLPRGSPSETCLMKIFVATVEAILQRTFPSESSREEIRRNRYNMFGPA
SKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVTHEAKTNGSRRPVGKDPHHVSAMGS
ESLEVGGKQKEKIPKKLKKQGPVSAFDSYVLAAVCALSCELQLFPLLSRGSNYSDPKSILVAAK
HANDSSMELKNGIHSAVCHTRRILTILEALFSLKPSSIGTSWSYSSNEIVAAAMVAAHISDLFR
HSKACMHALSVLIRCKWDNEILSRASSLYNLIDIHSKVVASIVDKAEPLEAHLIPVPVLKKRSS
GLNGKKHNKYSNCTCLTAEQSSLLECKHSTDCKTLTMSEKVLHSSEAAQCTSGKGIASFPLDAS
DLANFLTMDRLIGFNCNAEDLIKSVLTENEELCFSVVSLLWHKLIASPEIQPSAESTSAQQGWR
QLPRNWMHLHFLRAIGIAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVEGIEVQHEPLGGY
ISCNKKQRQVPLAEATVEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLTSSAVDLPEIIV
ATPLLPPILSWNLYMPLLKVLEYLPRGSPSETCLMKIFVATVEAILQRTFPSESSREEIRRNRY
NMFGPASKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVTHEAKTNGSRRPVGKDPHH
VSAMGSESLEVGGKQKEKIPKKLKKQGPVSAFDSYVLAAVCALSCELQLFPLLSRGSNYSDPKS
ILVAAKHANDSSMELKNGIHSAVCHTRRILTILEALFSLKPSSIGTSWSYSSNEIVAAAMVAAH
ISDLFRHSKACMHALSVLIRCKWDNEILSRASSLYNLIDIHSKVVASIVDKAEPLEAHLIPVPV
LKKRSSGLNGKKHNKYSNCTCLTAEQSSLLECKHSTDCKTLTMSEKVLHSSEAAQCTSGKGIAS
FPLDASDLANFLTMDRLIGFNCNAEDLIKSVLTENEELCFSVVSLLWHKLIASPEIQPSAESTS
AQQGWRQLPRNWMHLHFLRAIGIAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVEGIEVQH
EPLGGYISCNKKQRQVPLAEATVEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLTSSAVD
LPEIIVATPLLPPILSWNLYMPLLKVLEYLPRGSPSETCLMKIFVATVEAILQRTFPSESSREE
IRRNRYNMFGPASKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVTHEAKTNGSRRPV
GKDPHHVSAMGSESLEVGGKQKEKIPKKLKKQGPVSAFDSYVLAAVCALSCELQLFPLLSRGSN
YSDPKSILVAAKHANDSSMELKNGIHSAVCHTRRILTILEALFSLKPSSIGTSWSYSSNEIVAA
AMVAAHISDLFRHSKACMHALSVLIRCKWDNEILSRASSLYNLIDIHSKVVASIVDKAEPLEAH
LIPVPVLKKRSSGLNGKKHNKYSNCTCLTAEQSSLLECKHSTDCKTLTMSEKVLHSSEAAQCTS
GKGIASFPLDASDLANFLTMDRLIGFNCNAEDLIKSVLTENEELCFSVVSLLWHKLIASPEIQP
SAESTSAQQGWRQLPRNWMHLHFLRAIGIAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVE
GIEVQHEPLGGYISCNKKQRQVPLAEATVEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPL
TSSAVDLPEIIVATPLLPPILSWNLYMPLLKVLEYLPRGSPSETCLMKIFVATVEAILQRTFPS
ESSREEIRRNRYNMFGPASKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVTHEAKTN
GSRRPVGKDPHHVSAMGSESLEVGGKQKEKIPKKLKKQGPVSAFDSYVLAAVCALSCELQLFPL
LSRGSNYSDPKSILVAAKHANDSSMELKNGIHSAVCHTRRILTILEALFSLKPSSIGTSWSYSS
NEIVAAAMVAAHISDLFRHSKACMHALSVLIRCKWDNEILSRASSLYNLIDIHSKVVASIVDKA
EPLEAHLIPVPVLKKRSSGLNGKKHNKYSNCTCLTAEQSSLLECKHSTDCKTLTMSEKVLHSSE
AAQCTSGKGIASFPLDASDLANFLTMDRLIGFNCNAEDLIKSVLTENEELCFSVVSLLWHKLIA
SPEIQPSAESTSAQQGWRQ(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	59023081-59021298(+) 59023037-59021251(+) 59023093-59021238(-)
Potential amino acid sequence	MQMHPIPRKLSPSLLSGSAFCTWLYFRRCN(+) MPALMDMAIPIARKKCKCIQFLGSCLHPC(+) MHLHFLRAIGIAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVEGIEVQHEPLGGYISCNKK QRQVPLAEATVEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLTSSAVDLPEIIVATPLLP PILSWNLYMPLLKVLEYLPRGSPSETCLMKIFVATVEAILQRTFPSESSREEIRRNRYNMFGPA SKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVTHEAKTNGSRRPVGKDPHHVSAMGS ESLEVGGKQKEKIPKKLKKQGPVSAFDSYVLAAVCALSCELQLFPLLSRGSNYSDPKSILVAAK HANDSSMELKNGIHSAVCHTRRILTILEALFSLKPSSIGTSWSYSSNEIVAAAMVAAHISDLFR HSKACMHALSVLIRCKWDNEILSRASSLYNLIDIHSKVVASIVDKAEPLEAHLIPVPVLKKRSS GLNGKKHNKYSNCTCLTAEQSSLLECKHSTDCKTLTMSEKVLHSSEAAQCTSGKGIASFPLDAS DLANFLTMDRLIGFNCNAEDLIKSVLTENEELCFSVVSLLWHKLIASPEIQPSAESTSAQQGWR QLPRNWMHLHFLRAIGIAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVEGIEVQHEPLGGY ISCNKKQRQVPLAEATVEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLTSSAVDLPEIIV ATPLLPPILSWNLYMPLLKVLEYLPRGSPSETCLMKIFVATVEAILQRTFPSESSREEIRRNRY NMFGPASKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVTHEAKTNGSRRPVGKDPHH VSAMGSESLEVGGKQKEKIPKKLKKQGPVSAFDSYVLAAVCALSCELQLFPLLSRGSNYSDPKS ILVAAKHANDSSMELKNGIHSAVCHTRRILTILEALFSLKPSSIGTSWSYSSNEIVAAAMVAAH ISDLFRHSKACMHALSVLIRCKWDNEILSRASSLYNLIDIHSKVVASIVDKAEPLEAHLIPVPV LKKRSSGLNGKKHNKYSNCTCLTAEQSSLLECKHSTDCKTLTMSEKVLHSSEAAQCTSGKGIAS FPLDASDLANFLTMDRLIGFNCNAEDLIKSVLTENEELCFSVVSLLWHKLIASPEIQPSAESTS AQQGWRQLPRNWMHLHFLRAIGIAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVEGIEVQH EPLGGYISCNKKQRQVPLAEATVEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLTSSAVD LPEIIVATPLLPPILSWNLYMPLLKVLEYLPRGSPSETCLMKIFVATVEAILQRTFPSESSREE IRRNRYNMFGPASKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVTHEAKTNGSRRPV GKDPHHVSAMGSESLEVGGKQKEKIPKKLKKQGPVSAFDSYVLAAVCALSCELQLFPLLSRGSN YSDPKSILVAAKHANDSSMELKNGIHSAVCHTRRILTILEALFSLKPSSIGTSWSYSSNEIVAA AMVAAHISDLFRHSKACMHALSVLIRCKWDNEILSRASSLYNLIDIHSKVVASIVDKAEPLEAH LIPVPVLKKRSSGLNGKKHNKYSNCTCLTAEQSSLLECKHSTDCKTLTMSEKVLHSSEAAQCTS GKGIASFPLDASDLANFLTMDRLIGFNCNAEDLIKSVLTENEELCFSVVSLLWHKLIASPEIQP SAESTSAQQGWRQLPRNWMHLHFLRAIGIAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVE GIEVQHEPLGGYISCNKKQRQVPLAEATVEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPL TSSAVDLPEIIVATPLLPPILSWNLYMPLLKVLEYLPRGSPSETCLMKIFVATVEAILQRTFPS ESSREEIRRNRYNMFGPASKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVTHEAKTN GSRRPVGKDPHHVSAMGSESLEVGGKQKEKIPKKLKKQGPVSAFDSYVLAAVCALSCELQLFPL LSRGSNYSDPKSILVAAKHANDSSMELKNGIHSAVCHTRRILTILEALFSLKPSSIGTSWSYSS NEIVAAAMVAAHISDLFRHSKACMHALSVLIRCKWDNEILSRASSLYNLIDIHSKVVASIVDKA EPLEAHLIPVPVLKKRSSGLNGKKHNKYSNCTCLTAEQSSLLECKHSTDCKTLTMSEKVLHSSE AAQCTSGKGIASFPLDASDLANFLTMDRLIGFNCNAEDLIKSVLTENEELCFSVVSLLWHKLIA SPEIQPSAESTSAQQGWRQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Yin et al., 2018

circRNA

Detail information of Solyc04g071990.2_circ_g.1

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