Plant Circular RNA Database

Detail information of AT5G02320_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT5G02320_circ_g.1
					
						ID in PlantcircBase
						ath_circ_035986
					
						Alias
						5:483190-485638
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 483190-485638  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G02320						
					
						Parent gene annotation
						
							Transcription factor MYB3R-5
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						flower
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G02320.3:7
AT5G02320.2:7
AT5G02320.1:6

General Information
CircRNA Name	AT5G02320_circ_g.1
ID in PlantcircBase	ath_circ_035986
Alias	5:483190-485638
Organism	Arabidpsis thaliana
Position	chr5: 483190-485638 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G02320
Parent gene annotation	Transcription factor MYB3R-5
Parent gene strand	-
Alternative splicing	NA
Support reads	2
Tissues	flower
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G02320.3:7 AT5G02320.2:7 AT5G02320.1:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTTGCTCCACACACCAACAAAATTATGAAACAAAAGCAACCACTAACCTCCTCTGGAGTCCAA
CCACCTTTTGCTCGTCTCATAGGTCCACTAGTCCTCctatttcattttagttcgggtgttagac
caaagccgtagattcatagctcaaggctgtgaggaagagaatgagaattgtttttcttcacggt
tctcttcc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTATTTCATTTTAGTTCGGGTGTTAGACCAAAGCCGTAGATTCATAGCTCAAGGCTGTGAGGAA
GAGAATGAGAATTGTTTTTCTTCACGGTTCTCTTCCCAGCAAAGCTTCAATTCTTCTGGAACCA
TACTGGTTTCTTCACACGATCTCTGTGTCAACAAGGATGGAATTATTTTAGATTTGTTACTCAG
ATTAGTGACATTAAATAAAAGATTTGAAATTTTCACTCACAGTTTTCTAAGGGAAGAAGGGTTC
TACACAGGCTTGTCTTCCTCAGACGTTTTAATTTCATTATCAGGCTGCTTCTCTTTTGCAGATG
TAAACTCAATCTCATTATCTGGCTGCTTCTCCTTTTCAGATGTAAACTCAAGCTGTCTTGATTT
GATTACAGCTGTTCTTTTAGCTCTTAACCGATATGGTGGAGACAAATTGAAAGCATTTCCATTT
AACCCGAGTTCTTCATCATCACTGCAATTATCAGTTGTCTCCAGCAACAAACTTTTTCTCATAT
CTTTACTTTCTTCTTTTCGATCAACTTCCTTAACTACACCATTAACAACAACAACAGCATCTGT
TTTCGCTGCCAAAACAACCTTTCGCCTTTTCCTAAAAATAGAAGGTGTGTTTGGAAAAGTCCTA
GCAGCTTCTCTCAAGAAAGATTCAGGACTTCTCGTTGCAGTTAAACCACTGTCTTTATTACAGG
GTGTAGTCATTAAGCTGACTGGTGATGCAGCACCGGGACTGCAACCACATTCATATCCGTACAT
ATGTTGCAGATCCGCTTCTGATGGAAAGTAATAGTCAAGTGGAGACTTATAGTATAAATTCCCA
TGCTTTGGAGTTCCAAACCCGTTTTCTACTTTCCTCTGGATTGATCTCTCAAAATAAGCTTTTG
AGTTGATTCTGACTTCCTCTGAAATTGGTTCCAGATTAGGCAACTGAGGCTTGTACTCAACAGG
AGAGCAAGCATACTCATTGACACCGATTCTTCGTGAAGCAGCTACTTCTTCAAGCAGAGCGGAA
GAAGAGTCAAAATGGTCTCTTCCAACTTCATTTGAATCTGTATTTCCTGAAGAGGTTTGGGTAA
GCGAATCAGAATCCTTGAAAGGTTTAGTTGCACTAGACTGCTTGGAATCTCTGTCTCCATCAGC
AATATCTTTCAGAACGATGAATTTGCTTGCTGGCGGTGGCAAGTTACCAGTTGCTAAGTAGAAC
TCTAATTTTTTCTTCAGTGAACTATTCCAATGGTTCTTTATGGCGTTATCAGTCCTGCAAAAAG
TACAGGTAGACATCAGAAGCAAAAACTGTATGAGATGTTCAAAAATGTCCATTAACTTTATTTT
TCACAAGGCCTTTTTCAACTACAAGTAAGTATACCTTCCTGGTAAAACCTTAGCAATTTCCGCC
CATTTGTTTCCGTACATTCGATGAGAATTCATGAGAGCTGATTCTTCTTCTACGGTCCAAGCAT
CCTTTCTAATACCAGGATTTAAATGGTTGTGCCACCTGTAATCGTAAACTCGTTGAGGCTTCCA
AACTCAACGGAGGTACAGGCTCTATTCTTCAGATAGTCAATATTCTAATCTTTGTTACCTTTCT
CGACATTGTTTCCCAATACGACCTGGTAAGGACTTGGCGATGACAGACCATTTGGCAGGTCCAT
ATTTTTTTACAAGTTCAACGATTTTATCATCCTCCTACAATTCACGAAAGAAAGAGAATTTTAG
AGCTACCAAATTTTTACGTAAAATGAAAACCAAAAAAAGTTTCAGAACATGAAAATGATAAGAG
AACCTCTTGAGTCCAAGGTCCTTTAACAAGCTCTGGATTAAGAACTTTCTGCCACCTGTGCAAG
CATTGGACTTCTGTTCTCTCTGGGAAAAATTCCGCTGTAAGATGAAATACAAAAAAATCAAACA
AACAGAACATTGACCGAAACCAGCTACTTTAACATTTAAGAGACAAAAAAGAAATCATGGTTCT
CTTGCAAAGTGCACAGCAGAGATCATGTTTACTGAATGAGAAAAATTCACAAAATTCTCAGCAG
ATTTAAGATACGAGTTCAGTTTTAAAAATGTATAAATTATACATTCAAGTATACATCAAGACAA
GAGTGTGATTAGAAGACCTATAATCTCATTCTAATGTATTGCAATACTACTTTTACATTCAAGA
AAAGAAATTTACCTATTTTCTTCCACCTCTTCCCCTTATACTTTTCAACTGCTCGTCTAAGTGT
CTCATCCTGAATAGTGATAAAAACCAATTACAGACCACAATAAGGCTAGTCTCGTCTTTCATTC
AAGTAAACACTAATCCTTATACATATAAGATACATAGTCGAATGAGGTTGCTCCACACACCAAC
AAAATTATGAAACAAAAGCAACCACTAACCTCCTCTGGAGTCCAACCACCTTTTGCTCGTCTCA
TAGGTCCACTAGTCCTC
						
					

			
		

Sequences
Splice junction sequence	GGTTGCTCCACACACCAACAAAATTATGAAACAAAAGCAACCACTAACCTCCTCTGGAGTCCAA CCACCTTTTGCTCGTCTCATAGGTCCACTAGTCCTCctatttcattttagttcgggtgttagac caaagccgtagattcatagctcaaggctgtgaggaagagaatgagaattgtttttcttcacggt tctcttcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTATTTCATTTTAGTTCGGGTGTTAGACCAAAGCCGTAGATTCATAGCTCAAGGCTGTGAGGAA GAGAATGAGAATTGTTTTTCTTCACGGTTCTCTTCCCAGCAAAGCTTCAATTCTTCTGGAACCA TACTGGTTTCTTCACACGATCTCTGTGTCAACAAGGATGGAATTATTTTAGATTTGTTACTCAG ATTAGTGACATTAAATAAAAGATTTGAAATTTTCACTCACAGTTTTCTAAGGGAAGAAGGGTTC TACACAGGCTTGTCTTCCTCAGACGTTTTAATTTCATTATCAGGCTGCTTCTCTTTTGCAGATG TAAACTCAATCTCATTATCTGGCTGCTTCTCCTTTTCAGATGTAAACTCAAGCTGTCTTGATTT GATTACAGCTGTTCTTTTAGCTCTTAACCGATATGGTGGAGACAAATTGAAAGCATTTCCATTT AACCCGAGTTCTTCATCATCACTGCAATTATCAGTTGTCTCCAGCAACAAACTTTTTCTCATAT CTTTACTTTCTTCTTTTCGATCAACTTCCTTAACTACACCATTAACAACAACAACAGCATCTGT TTTCGCTGCCAAAACAACCTTTCGCCTTTTCCTAAAAATAGAAGGTGTGTTTGGAAAAGTCCTA GCAGCTTCTCTCAAGAAAGATTCAGGACTTCTCGTTGCAGTTAAACCACTGTCTTTATTACAGG GTGTAGTCATTAAGCTGACTGGTGATGCAGCACCGGGACTGCAACCACATTCATATCCGTACAT ATGTTGCAGATCCGCTTCTGATGGAAAGTAATAGTCAAGTGGAGACTTATAGTATAAATTCCCA TGCTTTGGAGTTCCAAACCCGTTTTCTACTTTCCTCTGGATTGATCTCTCAAAATAAGCTTTTG AGTTGATTCTGACTTCCTCTGAAATTGGTTCCAGATTAGGCAACTGAGGCTTGTACTCAACAGG AGAGCAAGCATACTCATTGACACCGATTCTTCGTGAAGCAGCTACTTCTTCAAGCAGAGCGGAA GAAGAGTCAAAATGGTCTCTTCCAACTTCATTTGAATCTGTATTTCCTGAAGAGGTTTGGGTAA GCGAATCAGAATCCTTGAAAGGTTTAGTTGCACTAGACTGCTTGGAATCTCTGTCTCCATCAGC AATATCTTTCAGAACGATGAATTTGCTTGCTGGCGGTGGCAAGTTACCAGTTGCTAAGTAGAAC TCTAATTTTTTCTTCAGTGAACTATTCCAATGGTTCTTTATGGCGTTATCAGTCCTGCAAAAAG TACAGGTAGACATCAGAAGCAAAAACTGTATGAGATGTTCAAAAATGTCCATTAACTTTATTTT TCACAAGGCCTTTTTCAACTACAAGTAAGTATACCTTCCTGGTAAAACCTTAGCAATTTCCGCC CATTTGTTTCCGTACATTCGATGAGAATTCATGAGAGCTGATTCTTCTTCTACGGTCCAAGCAT CCTTTCTAATACCAGGATTTAAATGGTTGTGCCACCTGTAATCGTAAACTCGTTGAGGCTTCCA AACTCAACGGAGGTACAGGCTCTATTCTTCAGATAGTCAATATTCTAATCTTTGTTACCTTTCT CGACATTGTTTCCCAATACGACCTGGTAAGGACTTGGCGATGACAGACCATTTGGCAGGTCCAT ATTTTTTTACAAGTTCAACGATTTTATCATCCTCCTACAATTCACGAAAGAAAGAGAATTTTAG AGCTACCAAATTTTTACGTAAAATGAAAACCAAAAAAAGTTTCAGAACATGAAAATGATAAGAG AACCTCTTGAGTCCAAGGTCCTTTAACAAGCTCTGGATTAAGAACTTTCTGCCACCTGTGCAAG CATTGGACTTCTGTTCTCTCTGGGAAAAATTCCGCTGTAAGATGAAATACAAAAAAATCAAACA AACAGAACATTGACCGAAACCAGCTACTTTAACATTTAAGAGACAAAAAAGAAATCATGGTTCT CTTGCAAAGTGCACAGCAGAGATCATGTTTACTGAATGAGAAAAATTCACAAAATTCTCAGCAG ATTTAAGATACGAGTTCAGTTTTAAAAATGTATAAATTATACATTCAAGTATACATCAAGACAA GAGTGTGATTAGAAGACCTATAATCTCATTCTAATGTATTGCAATACTACTTTTACATTCAAGA AAAGAAATTTACCTATTTTCTTCCACCTCTTCCCCTTATACTTTTCAACTGCTCGTCTAAGTGT CTCATCCTGAATAGTGATAAAAACCAATTACAGACCACAATAAGGCTAGTCTCGTCTTTCATTC AAGTAAACACTAATCCTTATACATATAAGATACATAGTCGAATGAGGTTGCTCCACACACCAAC AAAATTATGAAACAAAAGCAACCACTAACCTCCTCTGGAGTCCAACCACCTTTTGCTCGTCTCA TAGGTCCACTAGTCCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.123980319

Conservation Information
Conserved circRNAs	NA
PMCS	0.123980319

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G02320_circ_g.1

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