Plant Circular RNA Database

Detail information of Csa3G164520_circ_g.1

			
						 General Information
					
						CircRNA Name
						Csa3G164520_circ_g.1
					
						ID in PlantcircBase
						csa_circ_001607
					
						Alias
						Chr3:10839950_10843486
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr3: 10839950-10843486  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Csa3G164520						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							Csa3G164520_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa3G164520.1:9

General Information
CircRNA Name	Csa3G164520_circ_g.1
ID in PlantcircBase	csa_circ_001607
Alias	Chr3:10839950_10843486
Organism	Cucumis sativus
Position	chrChr3: 10839950-10843486 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	e-circRNA
Identification method	CIRI2
Parent gene	Csa3G164520
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	Csa3G164520_circ_g.2
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa3G164520.1:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATGTGCACGTAGCCACTCAATTAGTGCAAACATTTTTGGATTTCCATCTACTTTACCCTCATT
GGTTGATGAAATATACTGTTTTGCCCACCTTTCAATcataactataaggattttgcaccttgga
tccatcgctccacttgtccaccattttcttccattgatgacaaaggtatctccttccctgcatg
taagttga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1290
Transcript exons: 10839950-10840034,10840390-10840532,10840863-10841057,10
841149-10841414,10841507-10841624,10841729-10841827,1084
2748-10842867,10843015-10843092,10843301-10843486
CATAACTATAAGGATTTTGCACCTTGGATCCATCGCTCCACTTGTCCACCATTTTCTTCCATTG
ATGACAAAGGTATCTCCTTCCCTTGTAATTGAGCATTCAATATTTGTTGCATCGGAGGATGCAA
CCTGTGGTTCAGTCATTGCAAATCCAGACCGTATCTTCCCTTCAAGCAAAGGAATAAGCCATTC
ATGTAGCTGTTGTTTGTTGCCATACCGCAACAATACCTCCATATTTCCAGTGTCAGGTGCGCCA
CAATTAAACACCTGAGGTGCCCAAATAGATCGACCCATTATCTCACAGAGGTGCCCATATTCAA
GATTGGAGAGGCCAGCACCAAGAAGAAGATTTTCCGCACCAGCTGAAACGATGTGGCTAGTTCC
ATTGAAAAGCAGTTTCCTTGCTCTAGCAGCACTATCAAAAGGTATCCACAAGTTCCATAAGCCT
TCTTTTTTAGCCATCTCCTTTAGTTTCTCTTCCTCTGGGTGAATGGTCCACCGTAAGGAAGACT
GAGCAAGTTTGTAAAATTCATTTTCCATAGGGTATATATGATCGTCCATGAACTTAATCAACTT
GGTTCTCAACTCCATGACCTTTTTACTGGGGACGAACTTTCCTTCATCTTTGAGAATCCCCCAA
TCTTCACCCTCCTTCCTTGTATATTGTGAATCAACTTGTACAATTGAATCAGATGGGGGATTCT
CAGGCAGCAAAGACTTTTGTTCAATAAATACCCAAGCAGCATCAACTAAAGCATTAGCCTTTTG
TACAGCAATCTGAGCACTCTCACCCCCTGATGCATTTCCCATAATCCATCGACTGTAAATTCCA
GCAAAGATTGCAGCTCCTCGAAAAATGGAGAAGGCAACATAAAATTTCCATGCAGAAAACGGCC
ATGGTTTTCCAGCGATAGAACAGTAACGAGCCAAATATTCTGTTAATGAAGGTATCCCTTCCAA
AGTTCCAATATTGTTAAAACCACTTGCTGTATTTGGAAGGTCAGAGTGGATGTCCAAGATGTAA
GGCAGGCAGAAATAAGCAACATCACACATTTGATTTCCAACCGTGGACAGCTCCCAATCAAGAA
TGCCTATTACTCGGTCCTCGGAGGGATGAAATATAAGATTATCAATTCGAAAATCTCCATGAAC
TAAGCCAGCTGTGACACCTGAAGAATCTTCTGAAGGAATATGTGCACGTAGCCACTCAATTAGT
GCAAACATTTTTGGATTTCCATCTACTTTACCCTCATTGGTTGATGAAATATACTGTTTTGCCC
ACCTTTCAAT
						
					

						Genomic sequence
						
							CATAACTATAAGGATTTTGCACCTTGGATCCATCGCTCCACTTGTCCACCATTTTCTTCCATTG
ATGACAAAGGTATCTCCTTCCCTGCATGTAAGTTGACAGTTTAAGTATTAAATATACCTATAAC
AAACAAAACACTTTAAGCACACTTGAAGATATATGTTTCCCAAAATTTCAACTGTCAATTTGGA
AATGATTAACGAACTATGAATGAAAAATAGAGATTGTTAAAAAATTAGTCAAGAAAAGCCATTC
AACATGCCTTTAGTTGAATGTTCAATATATAAAATATCCTCACATTTTTTTAAGTCTGCCAACA
GGAGGGAAAAAAAATAGAGAATGTAATCCAATAAGCAGCAAGGAATTTTTTATCTAGTAAACAG
ATGAACTACATAATCAGAATAGCACTTTTCTATAGATAAATGTTTAACATCGTTACCTTGTAAT
TGAGCATTCAATATTTGTTGCATCGGAGGATGCAACCTGTGGTTCAGTCATTGCAAATCCAGAC
CGTATCTTCCCTTCAAGCAAAGGAATAAGCCATTCATGTAGCTGTTGTTTGTTGCCATACCGCA
ACAATACCTAATGAAAAAGATAGAATTATCAATAGCAGTTCCAATCATGTATGCTTACATCGTG
TTTGTCAAACTTTAACTGAACCATTGGTGGCAAAGATACCAACAGATTAGTGATTATAACATAC
AATACTCCACCTACGCAGAGGATATTCAACACCCAAAATTCTAAACGTAAAAGAGTATAAATTC
AATGGAAAATACATAAAGGTTTATTCATTCATTGGTCTATTCAATTTGTTAAAGTGTATATGCT
TACAGCAGTGTCAAGAATTCAGGGAATCTATAAAGCTAGCGACCTTCCAGGCAGAATTCAGGCT
ATAAAATTGGATCTTACCTCCATATTTCCAGTGTCAGGTGCGCCACAATTAAACACCTGAGGTG
CCCAAATAGATCGACCCATTATCTCACAGAGGTGCCCATATTCAAGATTGGAGAGGCCAGCACC
AAGAAGAAGATTTTCCGCACCAGCTGAAACGATGTGGCTAGTTCCATTGAAAAGCAGTTTCCTT
GCTCTAGCAGCACTATCAAACTGCACAAGAAATCTTATTTCTTAAACTGATATTTAAAGGAATA
ACAGTACAAGTATATAGATTAAATCAGAGAAGAGATAAAATACAAACAGGTATCCACAAGTTCC
ATAAGCCTTCTTTTTTAGCCATCTCCTTTAGTTTCTCTTCCTCTGGGTGAATGGTCCACCGTAA
GGAAGACTGAGCAAGTTTGTAAAATTCATTTTCCATAGGGTATATATGATCGTCCATGAACTTA
ATCAACTTGGTTCTCAACTCCATGACCTTTTTACTGGGGACGAACTTTCCTTCATCTTTGAGAA
TCCCCCAATCTTCACCCTCCTTCCTTGTATATTGTGAATCAACTTGTACAATTGAATCTGAAGT
TGTTGAAATGGGAAATAGCACCTTATGAAATAGCCTTAGTTATGTTCTACTAGAAGTGAAAAGC
TTTATTAGACAAAAAAACTACCAGATGGGGGATTCTCAGGCAGCAAAGACTTTTGTTCAATAAA
TACCCAAGCAGCATCAACTAAAGCATTAGCCTTTTGTACAGCAATCTGAGCACTCTCACCCCCT
GATGCATTTCCCTGCATTCTCAAAAGGAAACTGTGATTATTGCAATTTAAAAATTCAAAATCCA
TTCTTTCGTTTTTCCATGCTGCCAAGTGTATTCAATTAACTGATAAGATACCATAATCCATCGA
CTGTAAATTCCAGCAAAGATTGCAGCTCCTCGAAAAATGGAGAAGGCAACATAAAATTTCCATG
CAGAAAACGGCCATGGTTTTCCCTGCAACAAGGAAATTCCAGAAAAAGTGAATCTCAAGAACCA
GTGGAATAAATTTGAAACAATGAATCTTCATTTACGTCAGCTAGATCATGCACTGGCCCATGAA
CATTCATTTTCCTTGGACCGAATAAATATCAAACTAAAAAATTACTTAAATTGAATCTAAGCTG
ATTTTTATCTGTATCATAGGAGCTCAAAGGAAACTTAGGGATTTATTACTTAGACCATATTTAC
AATTTATTTACATAAACAAGAAGTCAGACACATATCAATAATTGATAAACGCTCAAGGACTGCA
AAGATAACGGAACAACAAGATACTGACATTACTTCTAGATAAGTTGCACCTTCAATTCCTTATC
ATCAAGCCTTCAATATATGGTTACAAGATGCTTTCTTCATGGCTATTTGTTTCAAGGCTAACGT
AGAAACGAAAAATCTAGGACGGGAAATGTGAAAACATAGGTATCTGTTATTATCAAAAGAACCT
GATTAATATTGCAAAAGTTTTTACTCGGGAAATCTTCAATAGCCATATACTAATGAATTAATTG
AAACTTTAAGTTATTATCCCTAATCAAAATCAAGTGAGTTCAATTAATTAAGTCTAGAAACAAT
AACTAATTATTACAATCTAATTAATTTACCACATTATATTAATATAAAGTAATTTGTGTCGATT
CTAAAAGAAACGAACAGAGATGGGCATAAAATAAGAAAGTTCCATTAATAACATAATAATAATA
AAAAAAACAATTAATGTATATATATATTCAAGATAATGCATGACCTTCGTAATAAAAACCCATT
TATTTAAAATGTTAACAAAAGAACAAAAATTGGTGGCGTCACCAACTATCATGCGGGTGAACCA
CAAAACTCAAATACTTGACCGAATAATTCTGATAATAACTACTTACAGCGATAGAACAGTAACG
AGCCAAATATTCTGTTAATGAAGGTATCCCTTCCAAAGTTCCAATATTGTTAAAACCACTTGCT
GTATTTGGAAGGTCAGAGTGGATGTCCAAGATGTAAGGCTGGAAAGAAATGGAAGTAGTACAGC
TTCAATATGTGTGAGCACATGAATAGAAATTATCCAACAATTAACAGCGTGCTGATGTTACAAG
TTAAAATGCTGAAACATTATGGTGATTCTTGAACATTGTAGAACAGAAATTCCCTACCAGGCAG
AAATAAGCAACATCACACATTTGATTTCCAACCGTGGACAGCTCCCAATCAAGAATGCCTATTA
CTCGGTCCTGCACTCTCAAAGGATGAAACAACGTGCAAGTTTTATTTATCTATATACACCTCAA
CTTCAGCAATAAACATCCAAGAAATAATAAATGTTAGCAGGGCGCCAGACTTTACAAAGATTAA
AACTCATCCTCTTGGTTGAACAAGCAAAAAACAAAATGGAGGACATGGACATTCAAAGGATATA
TTTATATAGAAGAAATAGCAGACCTCGGAGGGATGAAATATAAGATTATCAATTCGAAAATCTC
CATGAACTAAGCCAGCTGTGACACCTGAAGAATCTTCTGAAGGAATATGTGCACGTAGCCACTC
AATTAGTGCAAACATTTTTGGATTTCCATCTACTTTACCCTCATTGGTTGATGAAATATACTGT
TTTGCCCACCTTTCAAT
						
					

			
		

Sequences
Splice junction sequence	TATGTGCACGTAGCCACTCAATTAGTGCAAACATTTTTGGATTTCCATCTACTTTACCCTCATT GGTTGATGAAATATACTGTTTTGCCCACCTTTCAATcataactataaggattttgcaccttgga tccatcgctccacttgtccaccattttcttccattgatgacaaaggtatctccttccctgcatg taagttga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1290 Transcript exons: 10839950-10840034,10840390-10840532,10840863-10841057,10 841149-10841414,10841507-10841624,10841729-10841827,1084 2748-10842867,10843015-10843092,10843301-10843486 CATAACTATAAGGATTTTGCACCTTGGATCCATCGCTCCACTTGTCCACCATTTTCTTCCATTG ATGACAAAGGTATCTCCTTCCCTTGTAATTGAGCATTCAATATTTGTTGCATCGGAGGATGCAA CCTGTGGTTCAGTCATTGCAAATCCAGACCGTATCTTCCCTTCAAGCAAAGGAATAAGCCATTC ATGTAGCTGTTGTTTGTTGCCATACCGCAACAATACCTCCATATTTCCAGTGTCAGGTGCGCCA CAATTAAACACCTGAGGTGCCCAAATAGATCGACCCATTATCTCACAGAGGTGCCCATATTCAA GATTGGAGAGGCCAGCACCAAGAAGAAGATTTTCCGCACCAGCTGAAACGATGTGGCTAGTTCC ATTGAAAAGCAGTTTCCTTGCTCTAGCAGCACTATCAAAAGGTATCCACAAGTTCCATAAGCCT TCTTTTTTAGCCATCTCCTTTAGTTTCTCTTCCTCTGGGTGAATGGTCCACCGTAAGGAAGACT GAGCAAGTTTGTAAAATTCATTTTCCATAGGGTATATATGATCGTCCATGAACTTAATCAACTT GGTTCTCAACTCCATGACCTTTTTACTGGGGACGAACTTTCCTTCATCTTTGAGAATCCCCCAA TCTTCACCCTCCTTCCTTGTATATTGTGAATCAACTTGTACAATTGAATCAGATGGGGGATTCT CAGGCAGCAAAGACTTTTGTTCAATAAATACCCAAGCAGCATCAACTAAAGCATTAGCCTTTTG TACAGCAATCTGAGCACTCTCACCCCCTGATGCATTTCCCATAATCCATCGACTGTAAATTCCA GCAAAGATTGCAGCTCCTCGAAAAATGGAGAAGGCAACATAAAATTTCCATGCAGAAAACGGCC ATGGTTTTCCAGCGATAGAACAGTAACGAGCCAAATATTCTGTTAATGAAGGTATCCCTTCCAA AGTTCCAATATTGTTAAAACCACTTGCTGTATTTGGAAGGTCAGAGTGGATGTCCAAGATGTAA GGCAGGCAGAAATAAGCAACATCACACATTTGATTTCCAACCGTGGACAGCTCCCAATCAAGAA TGCCTATTACTCGGTCCTCGGAGGGATGAAATATAAGATTATCAATTCGAAAATCTCCATGAAC TAAGCCAGCTGTGACACCTGAAGAATCTTCTGAAGGAATATGTGCACGTAGCCACTCAATTAGT GCAAACATTTTTGGATTTCCATCTACTTTACCCTCATTGGTTGATGAAATATACTGTTTTGCCC ACCTTTCAAT
Genomic sequence	CATAACTATAAGGATTTTGCACCTTGGATCCATCGCTCCACTTGTCCACCATTTTCTTCCATTG ATGACAAAGGTATCTCCTTCCCTGCATGTAAGTTGACAGTTTAAGTATTAAATATACCTATAAC AAACAAAACACTTTAAGCACACTTGAAGATATATGTTTCCCAAAATTTCAACTGTCAATTTGGA AATGATTAACGAACTATGAATGAAAAATAGAGATTGTTAAAAAATTAGTCAAGAAAAGCCATTC AACATGCCTTTAGTTGAATGTTCAATATATAAAATATCCTCACATTTTTTTAAGTCTGCCAACA GGAGGGAAAAAAAATAGAGAATGTAATCCAATAAGCAGCAAGGAATTTTTTATCTAGTAAACAG ATGAACTACATAATCAGAATAGCACTTTTCTATAGATAAATGTTTAACATCGTTACCTTGTAAT TGAGCATTCAATATTTGTTGCATCGGAGGATGCAACCTGTGGTTCAGTCATTGCAAATCCAGAC CGTATCTTCCCTTCAAGCAAAGGAATAAGCCATTCATGTAGCTGTTGTTTGTTGCCATACCGCA ACAATACCTAATGAAAAAGATAGAATTATCAATAGCAGTTCCAATCATGTATGCTTACATCGTG TTTGTCAAACTTTAACTGAACCATTGGTGGCAAAGATACCAACAGATTAGTGATTATAACATAC AATACTCCACCTACGCAGAGGATATTCAACACCCAAAATTCTAAACGTAAAAGAGTATAAATTC AATGGAAAATACATAAAGGTTTATTCATTCATTGGTCTATTCAATTTGTTAAAGTGTATATGCT TACAGCAGTGTCAAGAATTCAGGGAATCTATAAAGCTAGCGACCTTCCAGGCAGAATTCAGGCT ATAAAATTGGATCTTACCTCCATATTTCCAGTGTCAGGTGCGCCACAATTAAACACCTGAGGTG CCCAAATAGATCGACCCATTATCTCACAGAGGTGCCCATATTCAAGATTGGAGAGGCCAGCACC AAGAAGAAGATTTTCCGCACCAGCTGAAACGATGTGGCTAGTTCCATTGAAAAGCAGTTTCCTT GCTCTAGCAGCACTATCAAACTGCACAAGAAATCTTATTTCTTAAACTGATATTTAAAGGAATA ACAGTACAAGTATATAGATTAAATCAGAGAAGAGATAAAATACAAACAGGTATCCACAAGTTCC ATAAGCCTTCTTTTTTAGCCATCTCCTTTAGTTTCTCTTCCTCTGGGTGAATGGTCCACCGTAA GGAAGACTGAGCAAGTTTGTAAAATTCATTTTCCATAGGGTATATATGATCGTCCATGAACTTA ATCAACTTGGTTCTCAACTCCATGACCTTTTTACTGGGGACGAACTTTCCTTCATCTTTGAGAA TCCCCCAATCTTCACCCTCCTTCCTTGTATATTGTGAATCAACTTGTACAATTGAATCTGAAGT TGTTGAAATGGGAAATAGCACCTTATGAAATAGCCTTAGTTATGTTCTACTAGAAGTGAAAAGC TTTATTAGACAAAAAAACTACCAGATGGGGGATTCTCAGGCAGCAAAGACTTTTGTTCAATAAA TACCCAAGCAGCATCAACTAAAGCATTAGCCTTTTGTACAGCAATCTGAGCACTCTCACCCCCT GATGCATTTCCCTGCATTCTCAAAAGGAAACTGTGATTATTGCAATTTAAAAATTCAAAATCCA TTCTTTCGTTTTTCCATGCTGCCAAGTGTATTCAATTAACTGATAAGATACCATAATCCATCGA CTGTAAATTCCAGCAAAGATTGCAGCTCCTCGAAAAATGGAGAAGGCAACATAAAATTTCCATG CAGAAAACGGCCATGGTTTTCCCTGCAACAAGGAAATTCCAGAAAAAGTGAATCTCAAGAACCA GTGGAATAAATTTGAAACAATGAATCTTCATTTACGTCAGCTAGATCATGCACTGGCCCATGAA CATTCATTTTCCTTGGACCGAATAAATATCAAACTAAAAAATTACTTAAATTGAATCTAAGCTG ATTTTTATCTGTATCATAGGAGCTCAAAGGAAACTTAGGGATTTATTACTTAGACCATATTTAC AATTTATTTACATAAACAAGAAGTCAGACACATATCAATAATTGATAAACGCTCAAGGACTGCA AAGATAACGGAACAACAAGATACTGACATTACTTCTAGATAAGTTGCACCTTCAATTCCTTATC ATCAAGCCTTCAATATATGGTTACAAGATGCTTTCTTCATGGCTATTTGTTTCAAGGCTAACGT AGAAACGAAAAATCTAGGACGGGAAATGTGAAAACATAGGTATCTGTTATTATCAAAAGAACCT GATTAATATTGCAAAAGTTTTTACTCGGGAAATCTTCAATAGCCATATACTAATGAATTAATTG AAACTTTAAGTTATTATCCCTAATCAAAATCAAGTGAGTTCAATTAATTAAGTCTAGAAACAAT AACTAATTATTACAATCTAATTAATTTACCACATTATATTAATATAAAGTAATTTGTGTCGATT CTAAAAGAAACGAACAGAGATGGGCATAAAATAAGAAAGTTCCATTAATAACATAATAATAATA AAAAAAACAATTAATGTATATATATATTCAAGATAATGCATGACCTTCGTAATAAAAACCCATT TATTTAAAATGTTAACAAAAGAACAAAAATTGGTGGCGTCACCAACTATCATGCGGGTGAACCA CAAAACTCAAATACTTGACCGAATAATTCTGATAATAACTACTTACAGCGATAGAACAGTAACG AGCCAAATATTCTGTTAATGAAGGTATCCCTTCCAAAGTTCCAATATTGTTAAAACCACTTGCT GTATTTGGAAGGTCAGAGTGGATGTCCAAGATGTAAGGCTGGAAAGAAATGGAAGTAGTACAGC TTCAATATGTGTGAGCACATGAATAGAAATTATCCAACAATTAACAGCGTGCTGATGTTACAAG TTAAAATGCTGAAACATTATGGTGATTCTTGAACATTGTAGAACAGAAATTCCCTACCAGGCAG AAATAAGCAACATCACACATTTGATTTCCAACCGTGGACAGCTCCCAATCAAGAATGCCTATTA CTCGGTCCTGCACTCTCAAAGGATGAAACAACGTGCAAGTTTTATTTATCTATATACACCTCAA CTTCAGCAATAAACATCCAAGAAATAATAAATGTTAGCAGGGCGCCAGACTTTACAAAGATTAA AACTCATCCTCTTGGTTGAACAAGCAAAAAACAAAATGGAGGACATGGACATTCAAAGGATATA TTTATATAGAAGAAATAGCAGACCTCGGAGGGATGAAATATAAGATTATCAATTCGAAAATCTC CATGAACTAAGCCAGCTGTGACACCTGAAGAATCTTCTGAAGGAATATGTGCACGTAGCCACTC AATTAGTGCAAACATTTTTGGATTTCCATCTACTTTACCCTCATTGGTTGATGAAATATACTGT TTTGCCCACCTTTCAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.846980379

Conservation Information
Conserved circRNAs	NA
PMCS	0.846980379

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							10843422-10839952(-)
10840406-10843484(-)
						
					

						Potential amino acid sequence
						
							MFALIEWLRAHIPSEDSSGVTAGLVHGDFRIDNLIFHPSEDRVIGILDWELSTVGNQMCDVAYF
CLPYILDIHSDLPNTASGFNNIGTLEGIPSLTEYLARYCSIAGKPWPFSAWKFYVAFSIFRGAA
IFAGIYSRWIMGNASGGESAQIAVQKANALVDAAWVFIEQKSLLPENPPSDSIVQVDSQYTRKE
GEDWGILKDEGKFVPSKKVMELRTKLIKFMDDHIYPMENEFYKLAQSSLRWTIHPEEEKLKEMA
KKEGLWNLWIPFDSAARARKLLFNGTSHIVSAGAENLLLGAGLSNLEYGHLCEIMGRSIWAPQV
FNCGAPDTGNMEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSITREGDT
FVINGRKWWTSGAMDPRCKILIVMIERWAKQYISSTNEGKVDGNPKMFALIEWLRAHIPSEDSS
GVTAGLVHGDFRIDNLIFHPSEDRVIGILDWELSTVGNQMCDVAYFCLPYILDIHSDLPNTASG
FNNIGTLEGIPSLTEYLARYCSIAGKPWPFSAWKFYVAFSIFRGAAIFAGIYSRWIMGNASGGE
SAQIAVQKANALVDAAWVFIEQKSLLPENPPSDSIVQVDSQYTRKEGEDWGILKDEGKFVPSKK
VMELRTKLIKFMDDHIYPMENEFYKLAQSSLRWTIHPEEEKLKEMAKKEGLWNLWIPFDSAARA
RKLLFNGTSHIVSAGAENLLLGAGLSNLEYGHLCEIMGRSIWAPQVFNCGAPDTGNMEVLLRYG
NKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSITREGDTFVINGRKWWTSGAMDPRC
KILIVMIERWAKQYISSTNEGKVDGNPKMFALIEWLRAHIPSEDSSGVTAGLVHGDFRIDNLIF
HPSEDRVIGILDWELSTVGNQMCDVAYFCLPYILDIHSDLPNTASGFNNIGTLEGIPSLTEYLA
RYCSIAGKPWPFSAWKFYVAFSIFRGAAIFAGIYSRWIMGNASGGESAQIAVQKANALVDAAWV
FIEQKSLLPENPPSDSIVQVDSQYTRKEGEDWGILKDEGKFVPSKKVMELRTKLIKFMDDHIYP
MENEFYKLAQSSLRWTIHPEEEKLKEMAKKEGLWNLWIPFDSAARARKLLFNGTSHIVSAGAEN
LLLGAGLSNLEYGHLCEIMGRSIWAPQVFNCGAPDTGNMEVLLRYGNKQQLHEWLIPLLEGKIR
SGFAMTEPQVASSDATNIECSITREGDTFVINGRKWWTSGAMDPRCKILIVMIERWAKQYISST
NEGKVDGNPKMFALIEWLRAHIPSEDSSGVTAGLVHGDFRIDNLIFHPSEDRVIGILDWELSTV
GNQMCDVAYFCLPYILDIHSDLPNTASGFNNIGTLEGIPSLTEYLARYCSIAGKPWPFSAWKFY
VAFSIFRGAAIFAGIYSRWIMGNASGGESAQIAVQKANALVDAAWVFIEQKSLLPENPPSDSIV
QVDSQYTRKEGEDWGILKDEGKFVPSKKVMELRTKLIKFMDDHIYPMENEFYKLAQSSLRWTIH
PEEEKLKEMAKKEGLWNLWIPFDSAARARKLLFNGTSHIVSAGAENLLLGAGLSNLEYGHLCEI
MGRSIWAPQVFNCGAPDTGNMEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNI
ECSITREGDTFVINGRKWWTSGAMDPRCKILIVM
MLNYKGRRYLCHQWKKMVDKWSDGSKVQNPYSYD*
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						responsive to salt stress in root
					

			
		

Functional Information
Coding potential	Y
Potential coding position	10843422-10839952(-) 10840406-10843484(-)
Potential amino acid sequence	MFALIEWLRAHIPSEDSSGVTAGLVHGDFRIDNLIFHPSEDRVIGILDWELSTVGNQMCDVAYF CLPYILDIHSDLPNTASGFNNIGTLEGIPSLTEYLARYCSIAGKPWPFSAWKFYVAFSIFRGAA IFAGIYSRWIMGNASGGESAQIAVQKANALVDAAWVFIEQKSLLPENPPSDSIVQVDSQYTRKE GEDWGILKDEGKFVPSKKVMELRTKLIKFMDDHIYPMENEFYKLAQSSLRWTIHPEEEKLKEMA KKEGLWNLWIPFDSAARARKLLFNGTSHIVSAGAENLLLGAGLSNLEYGHLCEIMGRSIWAPQV FNCGAPDTGNMEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSITREGDT FVINGRKWWTSGAMDPRCKILIVMIERWAKQYISSTNEGKVDGNPKMFALIEWLRAHIPSEDSS GVTAGLVHGDFRIDNLIFHPSEDRVIGILDWELSTVGNQMCDVAYFCLPYILDIHSDLPNTASG FNNIGTLEGIPSLTEYLARYCSIAGKPWPFSAWKFYVAFSIFRGAAIFAGIYSRWIMGNASGGE SAQIAVQKANALVDAAWVFIEQKSLLPENPPSDSIVQVDSQYTRKEGEDWGILKDEGKFVPSKK VMELRTKLIKFMDDHIYPMENEFYKLAQSSLRWTIHPEEEKLKEMAKKEGLWNLWIPFDSAARA RKLLFNGTSHIVSAGAENLLLGAGLSNLEYGHLCEIMGRSIWAPQVFNCGAPDTGNMEVLLRYG NKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSITREGDTFVINGRKWWTSGAMDPRC KILIVMIERWAKQYISSTNEGKVDGNPKMFALIEWLRAHIPSEDSSGVTAGLVHGDFRIDNLIF HPSEDRVIGILDWELSTVGNQMCDVAYFCLPYILDIHSDLPNTASGFNNIGTLEGIPSLTEYLA RYCSIAGKPWPFSAWKFYVAFSIFRGAAIFAGIYSRWIMGNASGGESAQIAVQKANALVDAAWV FIEQKSLLPENPPSDSIVQVDSQYTRKEGEDWGILKDEGKFVPSKKVMELRTKLIKFMDDHIYP MENEFYKLAQSSLRWTIHPEEEKLKEMAKKEGLWNLWIPFDSAARARKLLFNGTSHIVSAGAEN LLLGAGLSNLEYGHLCEIMGRSIWAPQVFNCGAPDTGNMEVLLRYGNKQQLHEWLIPLLEGKIR SGFAMTEPQVASSDATNIECSITREGDTFVINGRKWWTSGAMDPRCKILIVMIERWAKQYISST NEGKVDGNPKMFALIEWLRAHIPSEDSSGVTAGLVHGDFRIDNLIFHPSEDRVIGILDWELSTV GNQMCDVAYFCLPYILDIHSDLPNTASGFNNIGTLEGIPSLTEYLARYCSIAGKPWPFSAWKFY VAFSIFRGAAIFAGIYSRWIMGNASGGESAQIAVQKANALVDAAWVFIEQKSLLPENPPSDSIV QVDSQYTRKEGEDWGILKDEGKFVPSKKVMELRTKLIKFMDDHIYPMENEFYKLAQSSLRWTIH PEEEKLKEMAKKEGLWNLWIPFDSAARARKLLFNGTSHIVSAGAENLLLGAGLSNLEYGHLCEI MGRSIWAPQVFNCGAPDTGNMEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNI ECSITREGDTFVINGRKWWTSGAMDPRCKILIVM MLNYKGRRYLCHQWKKMVDKWSDGSKVQNPYSYD*
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Csa3G164520_circ_g.1

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