Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_008312
Alias NA
Organism Arabidpsis thaliana
Position chr1: 22666518-22670964  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G61380_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 AT1G61430_circ_g.1 AT1G61430_circ_g.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G61520_circ_g.1 AT1G61520_circ_g.2 AT1G61520_circ_g.3 AT1G61520_circ_g.4 AT1G61520_circ_g.5 AT1G61520_circ_g.6 AT1G61520_circ_g.7 AT1G61520_circ_g.8 AT1G61520_circ_g.9 AT1G61520_circ_g.10 AT1G61520_circ_g.11 AT1G61520_circ_g.12 AT1G61520_circ_g.13 AT1G61520_circ_g.14 AT1G61520_circ_g.15 AT1G61520_circ_g.16 AT1G61520_circ_g.17 AT1G61520_circ_g.18 AT1G61520_circ_g.19
Support reads 4
Tissues inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTCTGTTTCTCCAAAAACCAAACGTGGCAAAGCCCAAGATCACAAAGAGGGTAAGGCTCACTG
TACTAGCAACAATGGTCATCTTGCGCTTATGTACATctagctcagaacgtgcaagacgaatgga
aagaagttctcctgctgcagaaaattgccttgtgtccattagatccttgctccacattaagcac
cctattcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAGCTCAGAACGTGCAAGACGAATGGAAAGAAGTTCTCCTGCTGCAGAAAATTGCCTTGTGTC
CATTAGATCCTTGCTCCACATTAAGCACCCTATTCCAGGAATATAAGAAAACGCCAAGCAAGAA
CAATTGTGGAGGCAATTTTGGTGGCATTCTTCAGCATTCTGAGAATTTGCATACTCGTAAAAGT
CTGGAGGCTTTATGTTGGGAACAGTATAGAAGACATTTGCATCTTTGCCACTGGAGTTTCCTTG
ACAATGTAGTTCGGTACGCCTCACACAACCACTAGTCCAGTTTCCTTTCTTCCACTCCTTAGCG
AATTTAGGAACAAAACCTTTGAAGCATTTACATTTTGGAGGAATTGATACAACACAAAGCCCAA
AAGGTCCACATACGCCATATATATCACATGAATTGGCTGGACCCTCGTAGGTTGATTCCCAGTC
CATTCCATTATGCACTAAGACCTTCATTGTTCCCTCTGATGTTAAAATCATGCGTGAAGGTTTG
CCTCTTTCAACAAATGAAAAGTATCCTGACCCATTTACATCCTGTGTTAAGATGAATGGACTTG
TGTATGATTCATCCATTTGTGGTGATCCAGTGAACCTTGTTTTAGCCCATGGACCGGTTCTATA
ATAACGTGTCGAGCCTCTCATAATAATCCCCTGTGATGGCACTTGCGGTGTAATCAGAGCCACA
AATTCGCCAGGCGATGGATCGGTGTAACTTTTCCAAGCAGTCAATCCTCGCTTCTCACCAGCGA
CGAGATTATACATCATAATTGACGTAGGGAGCAGAGTATTACCAAGATGCTCAAAGCTTTGCCA
TAGAGTCCTTCCCGAAACTTTGTCTATGAAAACAAGATTTCCATGGTCTGTAAGCTCTGCACGA
GACCCATTAGATGCAAAAATATCTCCGGTAGACCACACAACGCCATGTTTGCCATTAGATAACA
GAAGACTACCATTGCTGCTGATACCGAGATTTGCCGCAGAGTCTGTAACAGGCTTTTCTCTATT
AGCCACCCACACAACCACCTGGGGAATGATACTCTTGAACCAAATTCCGAGATACTGATTTTGG
GAGTTATTAAGACTGAAGAATCCCAATTCATAAACACCATTAGAGGAGCTGAGAGTTTGTCCAA
TTGAAAAGGGACTCTCTTTGGTTATCCCTGCAAAGCTAAAACTCATAAAGATGGTAAAAAAGGG
CAAATAAGCAAAGAACACTATCCTCTTCTTCCCCATCTGGTTTTTTTCCTCTCCAAAAACTATC
TTCTTCAGATTATTTTAAGAAGCAAACAGAGTAAGAAAGCCAAAACAAAAACACAGAGGGACTT
AGTGAGAACTATTTTCAAGCACCTATAAACAATGTTGACCAGATCAACCACACTTATCTTTATA
CAGGATCAAGTTAAACCCTATTTAATGAATACAAACAAAATTTTATCAAAATAGTTACATAACT
TCAACAAACAAAGTCCAACTATTTTACCCATTCAAATACGCAACATTGTCATTTCCATGTCCGT
TTAGCTTCTTGCGCTGAGAACCAGTGAAAGATAGCCACCGATACTCTGCAACCATATCGAAAGA
CGAGAACTTTCACAAGTCTGAATCCATTGATTGACCGCAGATTAAAAATCCCGTGATGTTCCCA
TGTTCTTGTCGCCAGCTCTTAGTTTCCAGAATCTGCAAATGATAAACATCAACACTCGTCTTTA
AATGTTACTTGATTCATTGGAACAGCTGTCTTGAATTGGAGACTACATTAATTCTCGTTCAGGC
ATTTTACCGAACATTTGAAATGCATAATCAAAACTTTCAGAGCTCCACTAGTGCCCAATTCCAT
CTCCAAGACTCCAACCATCTGGGCGACTGGGCGTGACTGTTTTCTCCAAAATAGCCGAAGAATT
CTACAGTCAATATTGGTGTGCCAGTTTCGCCGGAGAGAAGAAGACGACTTCAACAGTCAATTCT
ACAACACTAGAATTTCGAACACAAGCTTTTCTCCAAATCCAAACTCGAAATCTGAACCGGACCA
CAAAAAAATACAAACCGAACCAAACACATTCCGAATCGGGTCGTATTTTCGAATATTAAAAGGT
CCAAAATACGAATGGCCAATATAAGCCCATAAGGCCCAGTAAAATATTATTCCCCCCCCCCCCC
ACCCAACTCAACTCTTAACGATTATGTTTTTGAATTTGAAAACAAGCGTAAGCACGAGAGTTGA
GAGAGAGATAGAGAGATTTGGAGATCGAGAATTCAGGTGCGATTCTATGTCAAATCTCTATTTT
CAAGGACATGCTTGATCAGGTTCTACTCTTCTCCTTCTTCTTCTTCACTGGTATGGTTTCTAGG
ACATGCTTGATCAGGTTCTACTCTTCTCCTTCTTCTTCTTCACTGGTATGGTTTCTCGTCTTTA
GCTTAATTTGAGCTGTGATCGAATGACACTGATCAATCGGGAAATCGAAGTAAAACACAAGAGA
TGCTTACGAAACAGGAACTGGATAATCTTTGGTTAACCAAATTGGAAGTTTAGGAAATGACCAA
CTCTTCTCTCTTCTCTTTGAACAAGCCTTTTTGCATAATTTTGGATGTGATCTTCTCTTTTAAG
TTTTAACATAATGAAATAATCTACGTTGAAGTTAGCAACATTAGAAAATTTGATCCTTTGGAGA
ATAATTCCAATTCTAAAATTTTCCATCACACATTGATGTTCAACGTCCTAGGATCACAGACTCT
GTCATCTCATTGACAGTGATCATCAAATCATTAGACGGTGGTTCGTCATTTCTTGTGTGCACTG
CAAATGTGGGTTGTTTTGGCAGAGGAAGATCTGATGTTGTGGTAAGCATAGACAACAACTCAAG
TGTGTTTGGTCTGTCTGCAGGTTGATGTTGAACACAGAGCAAACCAATCTGGACACACCTTCCA
ACTTCGGCTGGATGAGAAGAATCATCAAGAGCTTGGTCCAAGAGATTAACTCCTCGGGTTTCAC
ACCAACATTCCCATACCTGCATTGGTTTCAGATCTTAACAATACAAGAGCAACAAACCTTTTAC
AAAATCGGAAAGTGCAAGAAAACATAAAGGCTGACTTACATATGCAAGAAGTGCTTTTCCTTCC
TCACCATAGCTGAACCTTGAAATCTTCTCTCCGCTGATGATTTCTAACAGAAGAACTCCGAAGC
TGTAGATGTCTGATTTCTCAGAGAATACTCCAGTCCATGCATACTCTGGAGACATATATCCTCT
GTGCAAACATCACATAGTTTCACATATGACTATCATGACAAGGGAATTAGTTTATCATGTTATC
GAAGAATGGTTCTTACAGAGTTCCCACAACCCTGCGAGTTTTGTCCTGATATTGGCTTCCCTGA
AACAACCGAGCCAACCCAAAATCTGATATTTTCGGGTTCATTTTCTCGTCCAGAAGAATGTTGC
TAACCTTCAGGTCTCTGTGAATTACTCTGAGGCGTGAGTCACGGTGGAGATAGAGAAGTCCACG
CACAATACCTTGAATGATATCAAATCTCTTTGGCCAATCAAGCTCGAGCCTTTTTCTTGAACCT
AAGCAAAAATACCATGTAAAAACTATAAAATAAGCAGTTCCAGAGGAAACCTACAAGAAAGAGG
CAAGATGTAACCCACCAAAAACAAAGGTATCAAGGCTTTTGTTTTTCATAAACTCATAAATCAA
TAGCTTTTCTTTTCCTTCAACACAGCATCCCAAAACCCGTACCAAGTTTCTGTGTTGGAGTTTT
GATATCAGTACTATTTCATTCATGAACTCCTGTTTGCCCTGCTCAGAGCTGCTAGAAAGGCGTT
TTACCGCAATTTCCCTTCCATCTTGCAGTTTTCCCTGAAAAAAGTTGCAAATGTCATCTTCAGA
AAAAACAGAAAAGAAAAAGAGCGAATAGGATAAAACGTTTCTCGCCTTGTAAACGGAACCAAAG
CCACCATGTCCGAGTTTGTTTGATAGACTGAAATTACTGGTGGCAGTTTGTATGGTATTCATCT
CAAAAAATTCTAAACCTGGGACGTCTTGTGATTGCAAATCATTCCTCCATGCATCTTCTGATAT
ATGAGCTGAAATTTGGGTTAGAATTTGTGAGTCAGTGCCAAATGAGCATATTAAGAGTATTTAA
AACCAGCCAAAACCAATGTACCAAAGAGAACATAGAAAATTCCGTCAGTTTAGTGTAGATTTGT
TGTATTTCACGATATATCGTAAGTTCGTAACAAAGGTAAAAGAGTAATTTTGTTGACAACCAAA
TGAGTAGATAAACAATCAGAGATTGTTCGATAGCATCAATAATGTTACCGTGATGTTTTACTCT
GTTTCTCCAAAAACCAAACGTGGCAAAGCCCAAGATCACAAAGAGGGTAAGGCTCACTGTACTA
GCAACAATGGTCATCTTGCGCTTATGTACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.56642964
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017