Detail information of AT2G38760_circ_g.1


General Information
CircRNA Name AT2G38760_circ_g.1
ID in PlantcircBase ath_circ_017283
Alias 2:16201473-16201706
Organism Arabidpsis thaliana
Position chr2: 16201473-16201706  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G38760
Parent gene annotation Annexin
Parent gene strand +
Alternative splicing NA
Support reads 1/1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G38760.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAAACCATTTGATTGCTGTGAGGAAAGCTTATTGTTCACTCTTTGACTCTTCTCTTGAAGAA
CACATTGCTTCTTCTCTGCCTTTTCCTCTTGCAAAGaaagctgtggtttcgtggacgtatgatc
cagcagagagagacgcaaggcttgtgaacaagattttgaacaaggagaagaagaagaaaagctt
agagaatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 234
Transcript exons: 16201473-16201706
AAAGCTGTGGTTTCGTGGACGTATGATCCAGCAGAGAGAGACGCAAGGCTTGTGAACAAGATTT
TGAACAAGGAGAAGAAGAAGAAAAGCTTAGAGAATTTGAAGGTTATAGTAGAGATCTCTTGCAC
GACTTCCCCAAACCATTTGATTGCTGTGAGGAAAGCTTATTGTTCACTCTTTGACTCTTCTCTT
GAAGAACACATTGCTTCTTCTCTGCCTTTTCCTCTTGCAAAG

Genomic sequence AAAGCTGTGGTTTCGTGGACGTATGATCCAGCAGAGAGAGACGCAAGGCTTGTGAACAAGATTT
TGAACAAGGAGAAGAAGAAGAAAAGCTTAGAGAATTTGAAGGTTATAGTAGAGATCTCTTGCAC
GACTTCCCCAAACCATTTGATTGCTGTGAGGAAAGCTTATTGTTCACTCTTTGACTCTTCTCTT
GAAGAACACATTGCTTCTTCTCTGCCTTTTCCTCTTGCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.357225673
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020