Detail information of BGIOSGA013935_circ_igg.1


General Information
CircRNA Name BGIOSGA013935_circ_igg.1
ID in PlantcircBase osi_circ_013893
Alias Chr03:38620377_38621392(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 40040483-40041498  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTCTGCAGGCACTTCAAAAACTGAATCATCCCAACATTGTGAAGTTAAAGGAGGTGACTATG
GAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgattttcgatgcattttaggctaaaagt
gctcgggtctgaaacctacgtgcttttcttgtcgccgaagatggtgtcagcaaatatacatcga
cgcacatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTTTCGATGCATTTTAGGCTAAAAGTGCTCGGGTCTGAAACCTACGTGCTTTTCTTGTCGCC
GAAGATGGTGTCAGCAAATATACATCGACGCACATGAACAGCGATGATGCGTTGCTGAATCCGT
CTGAAGCTGCAATAAGCATGACGGTTTTGCAAATTATGATACTAAACCATTCATGCTGCTACGC
CCTCGTCTGGAACTTTCTTCTTCTGATGCAACCGTGCACAAGCAAACCTAGCCTCGAAGCGATT
GTGATGAGTTTTAGAGGTGGTGCGGGTTCGATCACGTGGAGTTCTATTGGTGTTCAGTGACTCT
TGGCAAAAGTTCTCGTGTAAAATCGACGACGATGGAAAGGTCAGCAGTAATTATCTCGCGAATC
ATATTATTTGTTGCGTGCGCACTAATTTCTGACATGGCATCTAATTTCTTCTCAGGTACAAAGT
GATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAAT
GAAATTGTAAGTGCAGCTCTTGGCATAGTACATATGGTTACTTGGATCTTTTCATGTTAATTCA
GTTGCCTTCTGCTCCTTATATCTACTAACCTATAAAGGAACGAACAGTATTATTTGTTGCACCT
AATCACCTATGAATTTCCCACTTGAGGGAAATGCTAGCAATAATCATCTTCTACATCACCCCAG
ATGGCTACCTATTCGAGCTTGCACCTTGTTTGTTGGCTTATTATGTTAACATTTCCCCGAATAC
TGTGCAGGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATTAGTCTG
CGAGAGGTGAAGGTAATATATCTCATGTGTTATCAGATGAATACAAATTTGTTTTCAAATCTGT
GTGCTTAAAAGGAGAACCATCCTTCTGCAGGCACTTCAAAAACTGAATCATCCCAACATTGTGA
AGTTAAAGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021