Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G16870_circ_g.1 |
ID in PlantcircBase | ath_circ_002976 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5771692-5771946 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G16870 |
Parent gene annotation |
Mitochondrial 28S ribosomal protein S29-like protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | aerial |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G16870.1:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.27121539 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
5771836-5771694(-) |
Potential amino acid sequence |
MPIPEDSTLYDLVQMGIKSTHAAVNVVVRLRKELSVVKDVPVLIVIDQDFVKFNESRLRELRCK IHDPIVLGEGAGVGYLKGADAMPIPEDSTLYDLVQMGIKSTHAAVNVVVRLRKELSVVKDVPVL IVIDQDFVKFNESRLRELRCKIHDPIVLGEGAGVGYLKGADAMPIPEDSTLYDLVQMGIKSTHA AVNVVVRLRKELSVVKDVPVLIVIDQDFVKFNESRLRELRCKIHDPIVLGEGAGVGYLKGADAM PIPEDSTLYDLVQMGIKSTHAAVNVVVRLRKELSVVKDVPVLIVIDQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |