Detail information of GLYMA_10G075900_circ_g.2


General Information
CircRNA Name GLYMA_10G075900_circ_g.2
ID in PlantcircBase gma_circ_002602
Alias Gm10circRNA1215, gma_circ_0000384
Organism Glycine max
Position chr10: 7879254-7881864  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method Tophat, CIRI, CIRI
Parent gene GLYMA_10G075900
Parent gene annotation hypothetical protein
Parent gene strand +
Alternative splicing GLYMA_10G075900_circ_g.3
Support reads NA
Tissues root, leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered KRH32789:6
KRH32787:6
KRH32788:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAGCAGCCTGTTCTGATTTGGAGAAAATACGAAAACTTTGGAAAGAAGCTGAATTCCTGGAG
GCATCTTTTAGAGCAAAAGCTGATTCTCTGCAAGAGgtcttggagaaggatttggctgtttttg
ggttctttattgctttaggcagaagtacaaggtcatttcttttgacaaatggttttgatactct
agatgatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 744
Transcript exons: 7879254-7879372,7879647-7879719,7879802-7880022,7880108-
7880152,7881291-7881384,7881673-7881864
GTCTTGGAGAAGGATTTGGCTGTTTTTGGGTTCTTTATTGCTTTAGGCAGAAGTACAAGGTCAT
TTCTTTTGACAAATGGTTTTGATACTCTAGATGATCCAATTGAAGATTTCATCAGGTATCTTAT
TGGAGGCAGTATTTTATACTACCCTCAGCTCTCATCCATTAGTTCATATCAATTGTACGTAGAG
GTAGTTTGTGAAGAGTTGGATTGGCTTCCATTTTATCCGGGAATCACCAGCGTTACAAAACAAT
CTCATATGCATAGAAGTAAACATGAAGGTCCTCCCAATGCTGAAGCAGTGCGCCAAGCTTTTGA
TGTTTGCTCTCATTGGATGCAGAGCTTTATTAAATACAGTACATGGCTGGAGAGCCCTTCAAAT
GTGAAAGCAGCTGAGTTTCTGTCGACAGGGCACAAGAAGTTGATGGAATGCATGGAAGAACTTG
GGATGATTAGGGATAAGGCATTGGAGACCGAAGGCAAGAAAGCAGCTCATAGACGTAGATCTAC
AGTTCAGTCAACTATAAAAGAGTCAGGTTCTTTTGATGAGGCATTGAAAAGTGTTGAAGAGACT
GTTGTAAGACTTGAAAAGTTGCTTCAAGAGTTGCACGTATCAAGCTCTAGTTCTGGAAAAGAGC
ATTTGAAAGCAGCCTGTTCTGATTTGGAGAAAATACGAAAACTTTGGAAAGAAGCTGAATTCCT
GGAGGCATCTTTTAGAGCAAAAGCTGATTCTCTGCAAGAG

Genomic sequence GTCTTGGAGAAGGATTTGGCTGTTTTTGGGTTCTTTATTGCTTTAGGCAGAAGTACAAGGTCAT
TTCTTTTGACAAATGGTTTTGATACTCTAGATGATCCAATTGAAGATTTCATCAGGTACAACTT
GTATATGTTATTCCTGTTGTTAAAACATTATGTTTCTTGTTGTTTAAGAGTCTTATCATGTTAG
TGGCTATTAGGCTAGGCTTGTACTAGCTGTACTATGCTAGTAGATGACCTAGATAAATAAGTAT
TTTAGGTTAGTAACTTTACACACCATATCACTTCTCTCCTTTTCCATCTAATTCAAACTCATCT
TTCTTTATCTTTAACTTTGTTTTTGCTTTCTATGAATGTTTATGCATTTTTTTAATATAACTAT
TTGTTACAGGTATCTTATTGGAGGCAGTATTTTATACTACCCTCAGCTCTCATCCATTAGTTCA
TATCAATTGTACGTAGAGGTTAGTATTATGGTCATTAAATTTTACAGACACGCTTAATCATTAA
GTTATTTTAACTGGTAAAAGCCTATTAACTGCATAGGTAGTTTGTGAAGAGTTGGATTGGCTTC
CATTTTATCCGGGAATCACCAGCGTTACAAAACAATCTCATATGCATAGAAGTAAACATGAAGG
TCCTCCCAATGCTGAAGCAGTGCGCCAAGCTTTTGATGTTTGCTCTCATTGGATGCAGAGCTTT
ATTAAATACAGTACATGGCTGGAGAGCCCTTCAAATGTGAAAGCAGCTGAGTTTCTGTCGACAG
GGTAACTGAAACAATGTTTGTTTATGGTTTGACAAATACTAACTTCTAATTTAATAAATTATTA
TATGTATTTTATTTTATGTTAGGCACAAGAAGTTGATGGAATGCATGGAAGAACTTGGGATGAT
TAGGTAATCTATGAATCAAAGTCTGCATTTACAATGTATTTGCATTCAAATAGTTGCATTTATA
TTGTACTTGTACAAATTCATTGACGCCAATATTCAGGCATCAAAACTATACATATTTGGAGTAA
AATTAAGACCATGAAATTGATTGCTGAAAGCTTCATAAGAACAACTGAAAGAGATCAGTGTAGT
AACTGCATGTTACAGTTGCATATGCTTCTGTTATATTCATGCCAAAATATTCACCAAAAAATGT
TTGGAGGGTTGTCAAATGTGCTTTGTTGTTCTTGTTTTTGTAATTGGCCAATAAATGTGTGTAT
TTCGTCAACTTTAGCTTTCACAATAAATTTTTCATTTCTTCAATATAAAATTTGTTATTACATT
GCTAGGTTTTATCCTACAACTCTTACTTCAGAGGAGAATTTACTTCTATTAAACAGCCACAATC
ACATAAAAGAAAGTGAATATGGCATGTGACTACTCTTCAAACAAATGAATAATTACATGTGGAA
GACAAAATGGAAGGCCAAGTGTTGAATCTAGAGGATAGAATAACAACCTTGGAAACTGGCCCAC
TGATTATTAAGTTTGCATATATGTTGTGTCCTCTAAAGGCAGTGAAATTAGTTCTGTTATGATT
CAAATTATTATGAAATTCTGTATTTGTGCCTCTGAAGCATAAATGGTACTATTTTCAAATGTAT
CTTGTCAAAGTCCAAGACAATCCTTTAGGAAATGAACTTCGAGGTTGGTCAAGATAGTGCTACC
TTTTAACATGATGGCTCCATTTGGTTGGAAAATGTTCATTCACTTGGGGGGGGAGGGAGGTGGG
GGGAGTTAAAAATTCTATATACGTGCAAGGGATATGGGTTGAATGGTCATATTATGGGACAAAG
CATCATCTACCAGAGAGCTTGTTTAGCACCGACACCCTCATGCAACTAGTGCAGATACCATGTG
ATGTTGAACTAATTGTCTAATGTCTTGTATGGTGCCAACATTTTTTTGAAGTTGTTTATACATA
CTTTGTATTTATATTTTATAGCGTTTACTAGAATTCCAGGGGTTGTGAACCTGATGTTTTATAG
AGTTTCTTATTCCAAAGTTGTGTTGCTTATTATTTTTGTAAAATGTAATGCAGGGATAAGGCAT
TGGAGACCGAAGGCAAGAAAGCAGCTCATAGACGTAGATCTACAGTTCAGTCAACTATAAAAGA
GTCAGGTTCTTTTGATGAGGTTTGATTCCCATTTTCAAAATTTGAATTTCATCCAAGTGCTGCT
TCCAGTTTTGTTGAATTAGTAAATTACTTGGATTAGTGTCAAGCCTGAAAATATAGGCCTTAAA
GATTAATACATTTATTTTATTCTTGAATACTGTTAGAATAATGTACAGTTCATGCATAACATGT
TAAATGAGTTCATGCATCACATGTTAAATACATTTAGTTTTCATAGCAATTATAAACCTTTTGT
TTTGAAGTATCTCATTCTTGTTTATGCCTTCTCTTTGGCATATAATTTTAGGCATTGAAAAGTG
TTGAAGAGACTGTTGTAAGACTTGAAAAGTTGCTTCAAGAGTTGCACGTATCAAGCTCTAGTTC
TGGAAAAGAGCATTTGAAAGCAGCCTGTTCTGATTTGGAGAAAATACGAAAACTTTGGAAAGAA
GCTGAATTCCTGGAGGCATCTTTTAGAGCAAAAGCTGATTCTCTGCAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.212246828
Functional Information
Coding potential Y
Potential coding position 7879872-7881861(+)
7879371-7881722(-)
Potential amino acid sequence MHRSKHEGPPNAEAVRQAFDVCSHWMQSFIKYSTWLESPSNVKAAEFLSTGHKKLMECMEELGM
IRDKALETEGKKAAHRRRSTVQSTIKESGSFDEALKSVEETVVRLEKLLQELHVSSSSSGKEHL
KAACSDLEKIRKLWKEAEFLEASFRAKADSLQEVLEKDLAVFGFFIALGRSTRSFLLTNGFDTL
DDPIEDFIRYLIGGSILYYPQLSSISSYQLYVEVVCEELDWLPFYPGITSVTKQSHMHRSKHEG
PPNAEAVRQAFDVCSHWMQSFIKYSTWLESPSNVKAAEFLSTGHKKLMECMEELGMIRDKALET
EGKKAAHRRRSTVQSTIKESGSFDEALKSVEETVVRLEKLLQELHVSSSSSGKEHLKAACSDLE
KIRKLWKEAEFLEASFRAKADSLQEVLEKDLAVFGFFIALGRSTRSFLLTNGFDTLDDPIEDFI
RYLIGGSILYYPQLSSISSYQLYVEVVCEELDWLPFYPGITSVTKQSHMHRSKHEGPPNAEAVR
QAFDVCSHWMQSFIKYSTWLESPSNVKAAEFLSTGHKKLMECMEELGMIRDKALETEGKKAAHR
RRSTVQSTIKESGSFDEALKSVEETVVRLEKLLQELHVSSSSSGKEHLKAACSDLEKIRKLWKE
AEFLEASFRAKADSLQEVLEKDLAVFGFFIALGRSTRSFLLTNGFDTLDDPIEDFIRYLIGGSI
LYYPQLSSISSYQLYVEVVCEELDWLPFYPGITSVTKQSHMHRSKHEGPPNAEAVRQAFDVCSH
WMQSFIKYSTWLESPSNVKAAEFLSTGHKKLMECMEELGMIRDKALETEGKKAAHRRRSTVQST
IKESGSFDEALKSVEETVVRLEKLLQELHVSSSSSGKEHLKAACSDLEKIRKLWKEAEFLEASF
RAKADSLQE(+)
MKSSIGSSRVSKPFVKRNDLVLLPKAIKNPKTAKSFSKTSCRESAFALKDASRNSASFQSFRIF
SKSEQAAFKCSFPELELDTCNS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description playing a key role in low-temperature-responsive regulation
Other Information
References Zhao et al., 2017a; Wang et al., 2020