Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | GLYMA_10G075900_circ_g.2 |
| ID in PlantcircBase | gma_circ_002602 |
| Alias | Gm10circRNA1215, gma_circ_0000384 |
| Organism | Glycine max |
| Position | chr10: 7879254-7881864 JBrowse» |
| Reference genome | v2.0.38 |
| Type | e-circRNA |
| Identification method | Tophat, CIRI, CIRI |
| Parent gene | GLYMA_10G075900 |
| Parent gene annotation |
hypothetical protein |
| Parent gene strand | + |
| Alternative splicing | GLYMA_10G075900_circ_g.3 |
| Support reads | NA |
| Tissues | root, leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | KRH32789:6 KRH32787:6 KRH32788:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.212246828 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
7879872-7881861(+) 7879371-7881722(-) |
| Potential amino acid sequence |
MHRSKHEGPPNAEAVRQAFDVCSHWMQSFIKYSTWLESPSNVKAAEFLSTGHKKLMECMEELGM IRDKALETEGKKAAHRRRSTVQSTIKESGSFDEALKSVEETVVRLEKLLQELHVSSSSSGKEHL KAACSDLEKIRKLWKEAEFLEASFRAKADSLQEVLEKDLAVFGFFIALGRSTRSFLLTNGFDTL DDPIEDFIRYLIGGSILYYPQLSSISSYQLYVEVVCEELDWLPFYPGITSVTKQSHMHRSKHEG PPNAEAVRQAFDVCSHWMQSFIKYSTWLESPSNVKAAEFLSTGHKKLMECMEELGMIRDKALET EGKKAAHRRRSTVQSTIKESGSFDEALKSVEETVVRLEKLLQELHVSSSSSGKEHLKAACSDLE KIRKLWKEAEFLEASFRAKADSLQEVLEKDLAVFGFFIALGRSTRSFLLTNGFDTLDDPIEDFI RYLIGGSILYYPQLSSISSYQLYVEVVCEELDWLPFYPGITSVTKQSHMHRSKHEGPPNAEAVR QAFDVCSHWMQSFIKYSTWLESPSNVKAAEFLSTGHKKLMECMEELGMIRDKALETEGKKAAHR RRSTVQSTIKESGSFDEALKSVEETVVRLEKLLQELHVSSSSSGKEHLKAACSDLEKIRKLWKE AEFLEASFRAKADSLQEVLEKDLAVFGFFIALGRSTRSFLLTNGFDTLDDPIEDFIRYLIGGSI LYYPQLSSISSYQLYVEVVCEELDWLPFYPGITSVTKQSHMHRSKHEGPPNAEAVRQAFDVCSH WMQSFIKYSTWLESPSNVKAAEFLSTGHKKLMECMEELGMIRDKALETEGKKAAHRRRSTVQST IKESGSFDEALKSVEETVVRLEKLLQELHVSSSSSGKEHLKAACSDLEKIRKLWKEAEFLEASF RAKADSLQE(+) MKSSIGSSRVSKPFVKRNDLVLLPKAIKNPKTAKSFSKTSCRESAFALKDASRNSASFQSFRIF SKSEQAAFKCSFPELELDTCNS*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | playing a key role in low-temperature-responsive regulation |
| Other Information | |
|---|---|
| References | Zhao et al., 2017a; Wang et al., 2020 |