Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os10g0442100_circ_g.1 |
| ID in PlantcircBase | osa_circ_006901 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr10: 15886080-15889631 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os10g0442100 |
| Parent gene annotation |
Similar to Phosphoglycerate kinase. (Os10t0442100-00) |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os10t0442100-00:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.103791871 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
15889542-15886084(+) 15889534-15886082(-) 15886767-15889594(-) |
| Potential amino acid sequence |
MTICQQRIIHHIERLTDSEQVPFPRSYCLQSV*(+) MNGFGIPVPSCFVEKNSTKEVLQLIQTAHNRNIPIYYPTDTWCLNNKNNNHEKLEILDSAELLP GWTPADIGPSTLEKISSLMPLYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDVILVG SAACKAVKGISGSSSKYTTFKNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQPLVV DIGSGNGLFLFQMARDWEGSNFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRSIVSS YPGQLALVTIQIGGSNFLGKAPALNLLASLCDGLFFVGKLSLQIMNGFGIPVPSCFVEKNSTKE VLQLIQTAHNRNIPIYYPTDTWCLNNKNNNHEKLEILDSAELLPGWTPADIGPSTLEKISSLMP LYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDVILVGSAACKAVKGISGSSSKYTTF KNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQPLVVDIGSGNGLFLFQMARDWEGS NFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRSIVSSYPGQLALVTIQIGGSNFLGK APALNLLASLCDGLFFVGKLSLQIMNGFGIPVPSCFVEKNSTKEVLQLIQTAHNRNIPIYYPTD TWCLNNKNNNHEKLEILDSAELLPGWTPADIGPSTLEKISSLMPLYKKVLWIGPTCFDLTEEFS GGAAQLGRILDKASHDSCDVILVGSAACKAVKGISGSSSKYTTFKNASVVLEFLKGKILPGVAA LDKSYPYQIPWNAIFSDSSQPLVVDIGSGNGLFLFQMARDWEGSNFLGLEMNKKLVVRCLRDVA SVDKRNLYFVSTNATSTFRSIVSSYPGQLALVTIQIGGSNFLGKAPALNLLASLCDGLFFVGKL SLQIMNGFGIPVPSCFVEKNSTKEVLQLIQTAHNRNIPIYYPTDTWCLNNKNNNHEKLEILDSA ELLPGWTPADIGPSTLEKISSLMPLYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDV ILVGSAACKAVKGISGSSSKYTTFKNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQ PLVVDIGSGNGLFLFQMARDWEGSNFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRS IVSSYPGQLALVTIQ(-) MLLQLTKGIYILFQQMQHPHFDQLFQVTLDSWLLSLYRLEAVTSWERHLL*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |