Detail information of Os10g0442100_circ_g.1


General Information
CircRNA Name Os10g0442100_circ_g.1
ID in PlantcircBase osa_circ_006901
Alias NA
Organism Oryza sativa
Position chr10: 15886080-15889631  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0442100
Parent gene annotation Similar to Phosphoglycerate kinase. (Os10t0442100-00)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0442100-00:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATTTGCAATGACAATTTGCCAACAAAGAATAATCCATCACATAGAGAGGCTAACAGATTCAG
AGCAGGTGCCTTTCCCAAGAAGTTACTGCCTCCAATctgtatagtgacaagagccaactgtcca
gggtaacttgaaacaattgatcgaaatgtggatgttgcatttgttgaaacaaaatatctgacag
aaagaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTATAGTGACAAGAGCCAACTGTCCAGGGTAACTTGAAACAATTGATCGAAATGTGGATGTT
GCATTTGTTGAAACAAAATATCTGACAGAAAGAAACACCTGCGTCATTAATGCTAATTGCCAAA
ATATAGAAGCCAAAAAGTCCAAAACAAAATTACAAGAGTACCAGATTAATTCATATAGTGGTTA
GAAATAAATAAAAAGATTTCTCAGAAGAACCTTATATTTAAGGATTACGAACTGCAAGCAAGAA
CATACCCTTGTTATTTAGACAGTATGGTGTTTGAACTTGATAGCATAGCGACATCTGTATAAAG
TGTCACTACATGAGATCATCACAAAAAAAATATATCTTAGATTTTATAAACCATCATCTGTAAA
GTCAACTCTAGGATCCCTTCGCAAATAGTCAATCTAGTTCCAGAATAGCCACATAGGAGAAGGG
GTACTTCCAGTCAAGGTGGGCAGGTGGGCAGAGAGCCAGAGACAAGATAGTTCGTTACTTTGTT
TCAGTCGTTTTATGAGCACACTAGTTGCTGGAAATGAGAGTCTGGGACCACTCGCGTGAACAAA
AAAAAAGGGCGAGGAGAGAACAAGCAACATGTCTACACTTCTACCAACTAAAAACAGATCTGTA
GTTTGTAGAGATGCTTACAGATTCCTTTTGTCAACTGAAGCAACATCCCGAAGGCACCTTACAA
CAAGCTACATGAAAAGCAAGTCAAAAGGAGCTTGATCACTTATGTTAATAGAAACTACAGGGCA
GTTATTACCTTTTTATTCATCTCAAGCCCAAGAAAATTGGAGCCTTCCCAGTCTCTAGCCATTT
GAAAAAGAAATAAACCATTTCCTGCACAAATAGAAAAGAACTCAAAAGGGTGAGAGAATGAGAA
ATGTGATCCCACAAAATTCAACTAATATTCTCTATAGTAAGACGGATGTTATACATGTATTCAT
TCACTCTGGCAAAACAGCAAGCCAATCAGGCAGTCGCACTAAGGAATGAATTATACTTTGTGCT
TACTAGTCACTACAGAAGAGAAACTGAGATTTAAGATCTTCTAAAAATGGGAAACTTGTACTGG
AAGAGGAATATTGATATGCGATGTGAAAAGTTTTGAGTATTTCAATGCTATATGAGTTCACAGA
AAATGAATGGAACCGTTAACAGACAATGCAGCTTAAAGAGGTTCTGCCGAACCAAAAATCATTA
CATTGGTGTAAATCAGCTAAAACCTATAATAACTGGAATTAGTACAAAGACACCACAAATAATT
AAAAGGGAAGGTTCCTCCCAGTTTGTATTCATTGGATAGCACATACTGATCACTTTATCAGAGA
TTGAACATTGTAGTAGGGAGACCTACCACTTCCAATATCAACCACTAACGGTTGTGAAGAATCA
GAAAAGATAGCATTCCATGGTATCTGATAGGGATAACTCTGAAAAAATATGAGGGTATTTTATT
TTAATGACCAGCAATAAGGATCAGTACAACAAATAAGGCACTTTGTAATATTCCACTTCAGAAA
ACTAATGCAGTGTTAGTTGGTAAAAATATGGACCTGCTGGCAGAAATTATTCAGTAGAAGACAT
GACAATAGGTCCATCACTGTTCAGATTATATGCAAATCATTACCCATTTAGAAGACCATGAACA
GTCACTAGAAATCCCTGAGCGGAGTACTCCTGACTAAGTGGATATTTGTCATTCACTACACAAA
CACACATTGTTAAAGGGTTATTTTACAGGCATTATTAAAAAGAATTTCAATGCTTGATTCCCTG
TATTTAGTGTAATTTGTGAGTTCTGAAGCTGCACATTCTAGACTTGAAATATAAATGGTGTGTA
AAGTACTGTAAAAAGGACAATGCCGTAGCATTAGTTCATATAGAGGAGAAAAATGCCATGTTAG
ATGTTTGAATATGCTTTCATTAACTCAGATATTAACCTGGCAGATTGTTGAAGCTTTTATACAT
GCCATTTGAAGATATCGTGCTCTCATCACAAGGTCCAAAGTAGGATCACTTGGATATTAGACGT
TTAATAGTATAGGAATGCAAATTTGTTCTGGAATGCTGGGAACATTAGGGCCTCGGACTAAATT
TTTGTCCACATATGTTTTACAGTAGAATTTGTTGTCATGCATTGCCGAAAGGGAATAAGCATTC
TAGACAATGACTTACTTTATCCAATGCTGCAACACCAGGCAATATTTTTCCTTTCAGGAATTCC
AAAACAACAGATGCATTTTTAAATGTTGTATATTTTGATGATGATCCTGATATTCCTTTTACTG
CCTTGCATGCTGCACTCCCCACTAAAATAACATCGCAGCTATCATGGCTTGCCTTGTCCAGTAT
CCTGCCCAACTGTGCTGCCCCACCAGAAAACTCTTCTGTTAAATCAAAACATGTTGGCCCAATC
CATAGGACCTTCTGAGACATAGAAAACAAATGAATGTGATAAGTTTTCTAGGAATAAAAAAAGA
TTATCCTGAGAATTAAGATATATAAGATGATAACAACAAAAGAAACCTCAATGACGCATGAATC
ATGATGTCATAGAAAAGTCAACTTGAGCACTTCACATAAATTATCACTTATCAATTATAATGCT
GCTCTCAAGTTGCCTGAAGTGTATTATTATGTCTAGTACTTCAATGTGTTGACTTCTTTCTCAT
TTGTAAACTGAGTCTAAGACTGAGAACTTATGGGACGTGTCGATGCCACAAAACAAGGTGTGGT
GTGTACACCATGTAGTTTTTGGTATTTCCAAGCTAAAATAATGTAGAATCAACTACAGAAACAT
GAAGGTTTGTGAAATACTTTAGAGCATAAATTATTTTGATGTATTGTTTCTATGTGTTACACAG
AGTAGCACAAATACTTTTTATTGCTCAGTTACACTAACTGAAGGGAAATATTCATCAATACTCT
TTTCTTACCTTGTATAATGGCATTAACGAGGAAATTTTCTCCAATGTTGATGGCCCTATATCAG
CTGGTGTCCAGCCTAAAGAAATTAATCATAGAAGGAAAAACAGGTATCAGAAAGCTTCACTATT
ATTGTATGATTTATGTAAACAACTAATACTTTGAAATATAAGTTGTTCAAAAGGATGAAAATGA
TGTATTACAAACAGGATGTTAACACTAATTAAGGAAATTGTTGCAGTGTATGAGTTGTCAAGAA
ATAGGGCATTCCTATTGAAAACATGTGAACGAAAATCAGAGAAATGACTAGTATATTCACCAGG
CAATAGTTCAGCAGAGTCGAGAATTTCCAACTTTTCATGATTGTTGTTCTTGTTGTTCAAACAC
CAGGTGTCAGTTGGATAATAAATAGGAATATTCCTGTTATGAGCTGTTTGTATAAGTTGTAGCA
CTTCCTTAGTTGAATTCTTTTCTACAAAACAAGAGGGCACTGGTATTCCAAAGCCATTCATTAT
TTGCAATGACAATTTGCCAACAAAGAATAATCCATCACATAGAGAGGCTAACAGATTCAGAGCA
GGTGCCTTTCCCAAGAAGTTACTGCCTCCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.103791871
Functional Information
Coding potential Y
Potential coding position 15889542-15886084(+)
15889534-15886082(-)
15886767-15889594(-)
Potential amino acid sequence MTICQQRIIHHIERLTDSEQVPFPRSYCLQSV*(+)
MNGFGIPVPSCFVEKNSTKEVLQLIQTAHNRNIPIYYPTDTWCLNNKNNNHEKLEILDSAELLP
GWTPADIGPSTLEKISSLMPLYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDVILVG
SAACKAVKGISGSSSKYTTFKNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQPLVV
DIGSGNGLFLFQMARDWEGSNFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRSIVSS
YPGQLALVTIQIGGSNFLGKAPALNLLASLCDGLFFVGKLSLQIMNGFGIPVPSCFVEKNSTKE
VLQLIQTAHNRNIPIYYPTDTWCLNNKNNNHEKLEILDSAELLPGWTPADIGPSTLEKISSLMP
LYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDVILVGSAACKAVKGISGSSSKYTTF
KNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQPLVVDIGSGNGLFLFQMARDWEGS
NFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRSIVSSYPGQLALVTIQIGGSNFLGK
APALNLLASLCDGLFFVGKLSLQIMNGFGIPVPSCFVEKNSTKEVLQLIQTAHNRNIPIYYPTD
TWCLNNKNNNHEKLEILDSAELLPGWTPADIGPSTLEKISSLMPLYKKVLWIGPTCFDLTEEFS
GGAAQLGRILDKASHDSCDVILVGSAACKAVKGISGSSSKYTTFKNASVVLEFLKGKILPGVAA
LDKSYPYQIPWNAIFSDSSQPLVVDIGSGNGLFLFQMARDWEGSNFLGLEMNKKLVVRCLRDVA
SVDKRNLYFVSTNATSTFRSIVSSYPGQLALVTIQIGGSNFLGKAPALNLLASLCDGLFFVGKL
SLQIMNGFGIPVPSCFVEKNSTKEVLQLIQTAHNRNIPIYYPTDTWCLNNKNNNHEKLEILDSA
ELLPGWTPADIGPSTLEKISSLMPLYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDV
ILVGSAACKAVKGISGSSSKYTTFKNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQ
PLVVDIGSGNGLFLFQMARDWEGSNFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRS
IVSSYPGQLALVTIQ(-)
MLLQLTKGIYILFQQMQHPHFDQLFQVTLDSWLLSLYRLEAVTSWERHLL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017