Detail information of BGIOSGA035407_circ_g.1


General Information
CircRNA Name BGIOSGA035407_circ_g.1
ID in PlantcircBase osi_circ_009091
Alias Chr11:22249262_22249810(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 16799034-16799579  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA035407
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA035407-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGGAGGCAGCTGTCATTGGAGTGGACTGCCTTGGGTTTGACTTGAGAGTGTGCTCAGGAACA
CAAGTGCAGACACTGAGATTTGCGTTCCCTGCAAAGgatgatgaaccacggaaagataacaagg
agagtggtgcaacatttttcaaggttgaggttctgagcattgagctgatcactgcatatggaac
tgaggtag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGATGAACCACGGAAAGATAACAAGGAGAGTGGTGCAACATTTTTCAAGGTTGAGGTTCTGA
GCATTGAGCTGATCACTGCATATGGAACTGAGGTAGTATTTCCATCTATCAGTCTATGAACAAT
CAACAATGTACTATGGAATTATTGTTCTATATCTCTTCAGCTTTAGTAAAATTGTTTTTCATTC
TTGAATTCCTTGTAGCCAAAGGTAAAGATAGGGGAATACCGGAAAGCTAGGCCAGATATCATTG
CGCATTCTGCACCGAACATAATATCGCGCTTGAGAGCTGGTGGAGACAAGATAACCCAGGCTCT
GAAATCACTCTGCTGGAGGTGCAAGGCCATCCAAATAGAGGTACAAATTTCTTCAGATTGCTGA
ACATTATGGAGGAAGTACAATGCCTGCTAATGTTGGGTCATCACTGTAATTGTAATCTTTCCAC
AGGAGGCAGCTGTCATTGGAGTGGACTGCCTTGGGTTTGACTTGAGAGTGTGCTCAGGAACACA
AGTGCAGACACTGAGATTTGCGTTCCCTGCAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021