Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G24190_circ_g.7 |
ID in PlantcircBase | ath_circ_004132 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 8568507-8569253 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G24190 |
Parent gene annotation |
SIN3-like 3 |
Parent gene strand | - |
Alternative splicing | AT1G24190_circ_g.6 AT1G24190_circ_g.8 AT1G24190_circ_g.9 1_circ_ag.10 AT1G24190_circ_g.11 |
Support reads | 17 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G24190.3:3 AT1G24190.1:3 AT1G24190.2:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.1172472 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8568931-8568509(-) |
Potential amino acid sequence |
MRGTNKENEHRDARDFEPHSKKEQFLNKKQKLHIRGDDPAEISNQSKLSGAVPSSSTYDEKGAM KSYSQDLAIVDRVKEKLNASEYQEFLRCLNLFSKEIISRPELQSLVAILFRDHSDLLVEFTHFL PDTSATASIPSVKTSVRERGVSLADKKDRIITPHPDHDYGTEHIDQDRERPIKKENKEHMRGTN KENEHRDARDFEPHSKKEQFLNKKQKLHIRGDDPAEISNQSKLSGAVPSSSTYDEKGAMKSYSQ DLAIVDRVKEKLNASEYQEFLRCLNLFSKEIISRPELQSLVAILFRDHSDLLVEFTHFLPDTSA TASIPSVKTSVRERGVSLADKKDRIITPHPDHDYGTEHIDQDRERPIKKENKEHMRGTNKENEH RDARDFEPHSKKEQFLNKKQKLHIRGDDPAEISNQSKLSGAVPSSSTYDEKGAMKSYSQDLAIV DRVKEKLNASEYQEFLRCLNLFSKEIISRPELQSLVAILFRDHSDLLVEFTHFLPDTSATASIP SVKTSVRERGVSLADKKDRIITPHPDHDYGTEHIDQDRERPIKKENKEHMRGTNKENEHRDARD FEPHSKKEQFLNKKQKLHIRGDDPAEISNQSKLSGAVPSSSTYDEKGAMKSYSQDLAIVDRVKE KLNASEYQEFLRCLNLFSKEIISRPELQSL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |