Detail information of Pg_S5217.3_circ_g.1


General Information
CircRNA Name Pg_S5217.3_circ_g.1
ID in PlantcircBase pgi_circ_000197
Alias novel_circ_0000780
Organism Panax ginseng
Position chrPg_scaffold5217: 53163-54612  JBrowse»
Reference genome ginseng_v1
Type   i-circRNA
Identification method find_circ, CIRI
Parent gene Pg_S5217.3
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCCTCCTATAACAAGAATGTTTACTAGTTCTGATGGACAGTGGTTGGCTGCTATCAACTGCTT
TGGAGATGTATATGTATTTAATCTGGAGATACAAAGggttatactttacaagttctcaagagat
gcagatggatccactgaggacaagtcctcaattgaagtaatgaagaaatgggtctatgttggtt
atgtgaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTATACTTTACAAGTTCTCAAGAGATGCAGATGGATCCACTGAGGACAAGTCCTCAATTGAA
GTAATGAAGAAATGGGTCTATGTTGGTTATGTGAGAGCTCATACCCATGATGTAAGGGCCTTGA
CTGTTGCGGTACCCATTAGTCGAGAAGGTTTGCAGTGGTTTCTTGAGTCTAGTTTTTATTAGGT
TGAATACTTTGACTTTTGGTCATTTTACTCTTTGATACATACCCGTGTCATTGACTCATTGTAT
TTAATACATTTGCAGATACGTTACCGAATGAAAAGGTAAAGAGGGTTCGTGGTAGGGAGAAGCC
CCTTGATTTTAGTTATCATAAGTGGGCTCATTTGGGTGTTCCCATGCTTATCTCATCTGGTGAT
GATACTAAGCTTTTTGCATATTCTGCCAACGAGTTTACCCAGTTCTCTCCACATGATGTCTGCC
CAGCACCACAGAAACCACCCATTCAACTAGTGCTGGATACAGTTTTCAATCGAACTTCTTTGCT
TCTGGTCCAGGCCTCTTACTGGTTAGATATTTTATGCATCCGTACTAAAACAAGTGTTGACCCT
GATATTTCTGGACCTTCTGGTGGAAATGCAACAACAGATTTGGTTGTGAGAGTCAAGAGTAAGG
GTTCTGAGAAGATTATTTGTAGCACCATGTCAAATTCAGGGTTGTTTTTTGCATATTCTGACCA
TGTGAAACCTAGCTTTTTTAAACTGAGAAAAAGTGAAGCTGGAAAAAGTGCATTGACTGTTGAA
AAAAGGAAACTTCCTCTAAAATTACCATTTGCACATTCTATGGCTTTCAGTTTTGATTCTTCGC
GATTGATGATAGCAGGGAGTGATAGAAGGATATATGTAAGCTTACTCTTTAAATTTCAATTACT
CTTTTCCATCTCTCACTATGTAAATTATGGTATATTTATTCATTATTATTCCTTTAGTTCAAAG
GACAACTATGTATCCCTAAGGGTATTACTGTCTTCTCGGGGTGGCTGTGAAATCATACCGAACA
CCGTTAAGAGTTTTTGAGTTAAAACACCTCCCACCATAAGTTCACAAAGCGGTGTGGGATTCAT
GCCCTGATATTCGTGTAATATTGAATCTAATACCCAAAGGACATAATTGGGTTTGAGGCTTTAA
TGAGCTTATAGAAGTTAATATTTGAGGTGATGGGTTTTAATACCACCTAGATTCCTAGGATTCA
TTTAAATATTCTCAAGTGTTCTCTTCTTTTTTGCCCTTCTTTTGTAATGCAGGTTGTAGATGTC
GAAAGCTTGAAACTGATCCATACATTTACTCCTTGTCGTAAGGAGATTGATGAAGAAATGCCAC
CCAGTGAGCCTCCTATAACAAGAATGTTTACTAGTTCTGATGGACAGTGGTTGGCTGCTATCAA
CTGCTTTGGAGATGTATATGTATTTAATCTGGAGATACAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Bian et al., 2021