Detail information of AT5G04360_circ_g.2


General Information
CircRNA Name AT5G04360_circ_g.2
ID in PlantcircBase ath_circ_036364
Alias NA
Organism Arabidpsis thaliana
Position chr5: 1223476-1228424  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT5G04360
Parent gene annotation Pullulanase 1, chloroplastic
Parent gene strand +
Alternative splicing AT5G04360_circ_g.3
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G04360.2:21
AT5G04360.1:21
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACGACTCGTTTTCTGGGGGCTTCACTGTACCGGCAAGAACAACGACGGTGTTTGTTGAATCGC
GGAATGGTTGAAATTTATCCTTTATAGCAATAACAGtgccaatgatgagactgttgagcctgaa
aatcgtggtggatatctggctttcacttcaaaggtgcatatatctttgtccatgcgcatacctt
catcatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCCAATGATGAGACTGTTGAGCCTGAAAATCGTGGTGGATATCTGGCTTTCACTTCAAAGGTG
CATATATCTTTGTCCATGCGCATACCTTCATCATCTTTGTCGATATGGGTTGTTTGAATTCACA
TGTTTTACTGGTGATCCCAAATTCTAGTTGTATTTCTGACACATTTGCTGCTCAGAAAAGATGC
TCTGATTCATCATGTTGTGTCATATCTCATTAGATATATTGGCAGGATTCTGCAGGTGTGAAAC
ATCTTCAGAAATTAGTTGATGCAGGTCTTACCCATCTACATCTTCTTCCAACATTTCAGTTTGG
TGATGTTGATGATGAGAAGGAGAATTGGAAGTCTGTAGGTATATTTGATGTCTCAAGCACACGC
TTAAACTTAATAGACTGTAAACGATTCATTTTTGGGATGCATTTTCTCTTTAAATTTGAGGCCT
TATTTATTGAACTCAAGTTAGAGATCAAAAGCCGGAAGGGCCTTAAGTCTTCAGACCAATAGAA
ACATAAGCAAAAGTAACAAAGTCGTCTGTCTTATTTCTGGTTTTTATTGTAGATATAATTTGAC
CTTTTTATTGTAGACACCAGTCTGCTGGAAGGATTACGACCTGATTCAACTGAGGCACAAGCTC
GTATTACAGAAATCCAGAATGATGATGGCTATAACTGGGGGTAGTTTGTTTTACACAAGTTACT
TCATTCTTCATAATGAATCAATCACCTTCATCACAAGTTTTATGTTTTGTGAAGGTATAATCCT
GTGCTCTGGGGAGTCCCAAAAGGAAGCTATGCTAGTGATCCGACTGGTCCATGCCGCATAATTG
AATTTAGAAAAATGGTTCAGGTTTGCATTTTTCCCATGTTTGGATATTGAAAATAGTAAGTGTA
TACTGGTCCTGGTTATTTGCAATACTAATAGGCTCATTGAAAGCTAAAATTTGTAGTGATTCAT
ACAATGTGTTGATGACTGCATGATAAAGCCTCATGCTATTTCGAGTTGGCTCTTTATGTAGCTT
CTTTTGGCAGGCTCTTAATTGTACTGGTCTTAATGTCGTCTTAGATGTTGTTTACAACCACTTG
CATGCAAGTGGGCCACATGACAAAGAATCTGTTCTTGATAAGGTGTGCACCTAACTAAGATTTG
ATTAATTTTCAGTTTGATAACTAACTGTCTAGCCTGAATTCTCATCTATCTTCCACGAAAAAAT
GTATTTGCTTAGATAGTTCCAGGTTACTATTTGAGAAGGAACAGTGATGGTTTTATTGAAAACA
GTACATGCGTAAACAACACTGCTAGCGAGCACTATATGGTTGATCGTCTCATACGGGATGATCT
ATTAAATTGGGTTGTTAACTATAAGGTACATGCTTGTAATCTTTTCTGATTATTTTCCATCTTG
CTACTTCTTCCCTCCTTGAAAAATATATTAGCTTTTTTCTCATGTATCTTTCAACCTTTGATCG
ACTGGCCATGACAATGTTTATTATATCCTGCAAAGTATATTTTTTGCTTGTATATTCCAGCTGC
CTGATCATGTGCTGATTCTGTCAGGTTGATGGTTTCCGTTTTGATCTTATGGGTCATATAATGA
AAGCTACAATTGTAAGCAGCTTTGTTACTCTGCATATTTTATTTGTATGATTGGTAGTTTTCTT
TACTCTTTTCTTCAGAAGTTAGTATGTTATTTCATTAGGTTTCTGTGTAAAATTACAAAAGTTT
TGAGATGAGTTGTAATATCTATATTCCTTAGGTAAACGCAAAATCTGCAATTGGTAGCTTGAGA
AAGGAAACAGATGGAGTTGATGGTTCAAGAATTTATTTGTAAGTCTTGGCTATTTTTCGGACTT
GCATGCAAGTTTTACGACATTCGTTATGTCCTTTTCCCTCGTGAAATAATTTTGGCCATATAAT
TTGTTGTGCTATCCCTTCATCATCAGATATGGCGAAGGATGGAACTTTGGTGAAGTTGCTGAAA
ATGGACGTGGAATAAATGCGTCACAGTTCAATTTAGGCGGGACAGGAATTGGAAGGTTTGAAAG
TCATTACTTTAATAAATTGTACCTTTTTAGTTAATCCGTTGGACATCTTGTCACTTTCTTCAAC
GATTGTACAACATTCCCTGATCAATTTTGTTTTACCTGAATTGTTTAAATCTCTATTCAGTTTT
AACGACCGTATACGAGATGCAACTCTTGGTGGATCTCCATTTGGTCATCCTCTTCAACAAGGAT
TCATTACAGGTTTATTGTTACAGGTATTTTGCCTTTTTTTTTGTGCAGTTACCAATCAAGATAT
TGAATCACCAAATTTTTTTAGCTCTAACCGAGGTTAAATGAAGAATATGGTCTTAACTCCACAT
TATCACATTTATATTCATGGCTTTACCAACAACTTATATTTGTGGTTTTGTTTGGAATAGACAC
TACAATACGGCTTTATTGTTTTGAGAGATGAGTAATCATCATGTATCCTTATTTGCCACTAGTA
AATTATTATTCAAGTAGAGAGATACGCTTATAAATATGTAAAATTCTTTTCTTCACTTCTTTAC
CTTCCCTATTATGGACAGCCTAACGCTCATGACCATGGTTCAGAAGCTACACAGGAACTGATGC
TTTCCACTGCGAAAAATCACATCCAGGTAATGATCTCCGTTAGATATCATATGATATATGGTAA
TCATATTTCTGAAATCAAGGCTTAAGGATTGCCCGAACCCAATCTTGTTCTCATATTCGCTTCA
TAGCTGTTCCCAATGCTTTCTCCTTTCTTACTACATTATGTTATCTTACTAGTTGAAATGTGAC
AGCTGTATGGATATCTTGTAACACTAAGTTCTAGAAAGTCTTTTTCTGATATTATCATTTTACT
TCCATCATGGATTAGACTGGTATGGCAGCAAATTTGAAGGATTATATGCTGACCAACCACGAAG
GAAAGGAGGTATGTAATTAGTCGCACTTTACTATTGAACCTTTCTCAAAGAATTTTTGCCTCAC
CTTTTATGTTGTATGGCTCTCATTTTGTAGGTGAAGGGATCAGAGGTTTTAATGCATGATGCTA
CACCTGTTGCATATGCTTCACTGCCAACAGAAACTGTATGCAACTTCCTTTCTATCACTTTCAT
CATTTAAGTGAAACAAGCACCAATAAATCTGCGATGCTCATACCAGCATTTCCCTGTGGTTTCA
GATTAATTACGTATCTGCTCATGACAATGAAACTCTCTTTGACATTATCAGTTTGAAGGTAATA
AAACAAATATGATGTCTGAACTTTTTCCAAATTTTCAATTCGTCAGCTCAATGTTTTCTTCTGC
TTGATTAGTATTTAATTCTGAAGCACTTCACTCTGCATGTTGTATCTGCGAGCCAACAGACGTG
TATCCACTCTCTATTTATTTGCATCATACATTTCTACTTGAGGATCTGTATAGACTTATTTCTG
CTTTGTTCTTGCAGACACCGATGGAAATATCTGTTGATGAAAGGTGTCGAATCAATCATTTGGC
GTCAAGTATGATTGCCCTCTCTCAGGTTCTCTACTGTATTCCAACTTAACTTAGTTATATGTAG
ACTAAGGGACTGCAAACTACGGCTAGTGGGCACTATTCTCGAATCTATTACACCAAGTAGATTT
CTGTTCAAATCTTAATATGTTTTATTCTGCATGTAAAGGGTATTCCATTCTTCCATGCTGGGGA
TGAGATTCTACGCTCGAAATCACTTGATCGAGATTCTTACAACTCCGGTGACTGGTTCAATAGG
TTTGCGTTTTCGTTCTTGTAATGAAACATTTCCTCTGATAATATATTTCCCCTACTGATCGACA
TGAACGGCAACAAGTTTAGGCTGGACTTCAGCTACAGTTCCAACAATTGGGGTGTTGGGCTTCC
TCCAAAAGGGAAAAACGAACACAACTGGCCACTGTAAGTGCCGACGGAATCGCCTTCAATAAAT
CTGATTGCTGAGTAAACCATACGCCCATTGCATGTTTCTGATACCAGTCAGCTCCTGCTGAACA
TGTCTCTAGGATCAAACCGAGGCTACAAGATCCATCTTTCAAGCCTAAGAGCAGTCACATAGTT
GCCACCCTCCACAATTTCTTAGATTTGTTACGCATCAGATACTCTTCACCTCTCTTTCGTTTAG
ATACAGCAAGGGCTATACAGGTCAGGATGACTACTGTTTAATAAATTCTCTACACTGGGTTCTC
TGCTATGAATTATTATCCTTCTTTTGCTATGCCATAAAATACTACCAGAAGCTCATGCAGGTTC
TAAGTGACTTATCGGTGGTTGTATTGACTCATTCACAATCACCGCAAATGAGATAAGAGATCTC
AAAAACTTGTGGACTGATATGACCTCTATTTTTTTTTTCCTCAGGAGCGAGTGCGATTTCATAA
CACAGGCCCCTCATCAATCCCTGGTGCCATTGTCATGAGCATTGAAGATGGTCACAGAGGCATC
CCAAGTGTATCTCAGATCGATCCAATGTAAGCAAGAAAAAAAAAAACAACTCGACAAATCTTTC
AAAGCTTCATATATGTAGACATTGTTCAGTAATGGTGCTGTTACCCCTACAGCTACTCACTCAT
TGTGGTAATCTTCAATGCACGCCCGTCTGAGTTCTCATATCCCAGTCCCGCTCTAAAAGACAGG
AAGCTCGAATTACACCCGGTTCAGGTAAATCACGCATCACAGAAAATAGAACAATATCACAAGC
TTTCACCTTTCAGTTTGTTGTGTATTAGAAAAGTTGTAAGATCTCTAAGCGATAAGTTAACTCT
GAGTGACTAACAGGTGATGTCAGCCGATGAAATAGTCAAGAAATCAGTTTACGACTCGTTTTCT
GGGGGCTTCACTGTACCGGCAAGAACAACGACGGTGTTTGTTGAATCGCGGAATGGTTGAAATT
TATCCTTTATAGCAATAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.110345614
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017