Detail information of EPlOSAG00000032424_circ_ig.1


General Information
CircRNA Name EPlOSAG00000032424_circ_ig.1
ID in PlantcircBase osa_circ_042179
Alias NA
Organism Oryza sativa
Position chr5: 27949840-27949918  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCCTCGACCGTCGCCCCTCCTCGTCGTCGAGCCGCCGctccccgcagaacaccacatccgcc
ggatccgtcgcctag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 79
Transcript exons: 27949840-27949918
CTCCCCGCAGAACACCACATCCGCCGGATCCGTCGCCTAGTTGCCTCGACCGTCGCCCCTCCTC
GTCGTCGAGCCGCCG

Genomic sequence CTCCCCGCAGAACACCACATCCGCCGGATCCGTCGCCTAGTTGCCTCGACCGTCGCCCCTCCTC
GTCGTCGAGCCGCCG
Conservation Information
Conserved circRNAs NA
PMCS 0.133965401
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study