Detail information of AT2G03640_circ_g.3


General Information
CircRNA Name AT2G03640_circ_g.3
ID in PlantcircBase ath_circ_012695
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1105578-1106151  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G03640
Parent gene annotation Nuclear transport factor 2 (NTF2) family protein with RNA bindin
g (RRM-RBD-RNP motifs) domain-containing protein
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03640.2:2
AT2G03640.5:2
AT2G03640.1:2
AT2G03640.4:2
AT2G03640.3:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTTACAACACCATTCTTTAAAGTTGATTGAGAATCAGCAGTTAGAATCTCGATCCTTGAGCT
TTTGTAGTCAATGGACATTATCTGATCATTAATCCCaattaatgcaaacgatttcttgggaacc
tcctcttgaagttttgcttcagcagctttaggtaagctactgttttcattcacaactttctcct
cagggact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 486
Transcript exons: 1105578-1105777,1105866-1106151
AATTAATGCAAACGATTTCTTGGGAACCTCCTCTTGAAGTTTTGCTTCAGCAGCTTTAGGTAAG
CTACTGTTTTCATTCACAACTTTCTCCTCAGGGACTTTCGCATGTCCGTTTGGTATGGCACTTG
CTGGCTTCGTCACCGTAGTTTTAGCTTCAGTAGGGACAATAACCGCCTCTACACTTTCATTTGC
AGGCTCTGCAGTGATAGCATTTGTTGACTGACTCTCCTCAACCTCCTTGGTAGCTTCTGGTTCA
ACAAACTCATCAGACACATACCTAAAGGTATCATTCAGCACAAAGTAGCTTCCATTCCGCGACA
CAAGAAAGAAACTCTGAGAAAATTTCCTCCTTCCTCCATCGTTCCCGATCACTAAACCCGTGAC
TAGAGTTACAACACCATTCTTTAAAGTTGATTGAGAATCAGCAGTTAGAATCTCGATCCTTGAG
CTTTTGTAGTCAATGGACATTATCTGATCATTAATCCC

Genomic sequence AATTAATGCAAACGATTTCTTGGGAACCTCCTCTTGAAGTTTTGCTTCAGCAGCTTTAGGTAAG
CTACTGTTTTCATTCACAACTTTCTCCTCAGGGACTTTCGCATGTCCGTTTGGTATGGCACTTG
CTGGCTTCGTCACCGTAGTTTTAGCTTCAGTAGGGACAATAACCGCCTCTACACTTTCATTTGC
AGGCTCTGCTAATCAAAACCATTACCACATGAATCAAAACAATGTCAAGGTGGTGAATATTTTC
AGATTCTTGAAACCATTGGTAAAACGACTTACCAGTGATAGCATTTGTTGACTGACTCTCCTCA
ACCTCCTTGGTAGCTTCTGGTTCAACAAACTCATCAGACACATACCTAAAGGTATCATTCAGCA
CAAAGTAGCTTCCATTCCGCGACACAAGAAAGAAACTCTGAGAAAATTTCCTCCTTCCTCCATC
GTTCCCGATCACTAAACCCGTGACTAGAGTTACAACACCATTCTTTAAAGTTGATTGAGAATCA
GCAGTTAGAATCTCGATCCTTGAGCTTTTGTAGTCAATGGACATTATCTGATCATTAATCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.192153724
Functional Information
Coding potential Y
Potential coding position 1106134-1105580(-)
Potential amino acid sequence MSIDYKSSRIEILTADSQSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFVLNDTFR
YVSDEFVEPEATKEVEESQSTNAITAEPANESVEAVIVPTEAKTTVTKPASAIPNGHAKVPEEK
VVNENSSLPKAAEAKLQEEVPKKSFALIGINDQIMSIDYKSSRIEILTADSQSTLKNGVVTLVT
GLVIGNDGGRRKFSQSFFLVSRNGSYFVLNDTFRYVSDEFVEPEATKEVEESQSTNAITAEPAN
ESVEAVIVPTEAKTTVTKPASAIPNGHAKVPEEKVVNENSSLPKAAEAKLQEEVPKKSFALIGI
NDQIMSIDYKSSRIEILTADSQSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFVLN
DTFRYVSDEFVEPEATKEVEESQSTNAITAEPANESVEAVIVPTEAKTTVTKPASAIPNGHAKV
PEEKVVNENSSLPKAAEAKLQEEVPKKSFALIGINDQIMSIDYKSSRIEILTADSQSTLKNGVV
TLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFVLNDTFRYVSDEFVEPEATKEVEESQSTNAITA
EPANESVEAVIVPTEAKTTVTKPASAIPNGHAKVPEEKVVNENSSLPKAAEAKLQEEVPKKSFA
LI(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017