Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G12680_circ_g.1 |
ID in PlantcircBase | ath_circ_002277 |
Alias | At_ciR4900 |
Organism | Arabidpsis thaliana |
Position | chr1: 4321516-4322331 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | AT1G12680 |
Parent gene annotation |
Serine/threonine-protein kinase PEPKR2 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G12680.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.239534599 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4322270-4321518(-) |
Potential amino acid sequence |
MRKKRKGSETEGWENLPDDLSCSTASRSSNFRSHFSLEGYARLKKRCKETEAVESVGSFKRRIA GVATAPPCGASSLVSSGRGLKRKIGCIDVSTQTGRKNKIDDDYVFGRNIGKGKFGSVRICKSRK NGTEFACKTLKKGEETVHREVEIMQHLSGHPRVVTLHAVYEESDCFHLVMELCSGGRLIDQMVK VGRYSEQRAANIFKDLMLVINYCHEMGVVHRDIKPENILLTAAGKIQLADFGLAMRIAKGEDLL FSYVSDSDIRYLLAGLMRKKRKGSETEGWENLPDDLSCSTASRSSNFRSHFSLEGYARLKKRCK ETEAVESVGSFKRRIAGVATAPPCGASSLVSSGRGLKRKIGCIDVSTQTGRKNKIDDDYVFGRN IGKGKFGSVRICKSRKNGTEFACKTLKKGEETVHREVEIMQHLSGHPRVVTLHAVYEESDCFHL VMELCSGGRLIDQMVKVGRYSEQRAANIFKDLMLVINYCHEMGVVHRDIKPENILLTAAGKIQL ADFGLAMRIAKGEDLLFSYVSDSDIRYLLAGLMRKKRKGSETEGWENLPDDLSCSTASRSSNFR SHFSLEGYARLKKRCKETEAVESVGSFKRRIAGVATAPPCGASSLVSSGRGLKRKIGCIDVSTQ TGRKNKIDDDYVFGRNIGKGKFGSVRICKSRKNGTEFACKTLKKGEETVHREVEIMQHLSGHPR VVTLHAVYEESDCFHLVMELCSGGRLIDQMVKVGRYSEQRAANIFKDLMLVINYCHEMGVVHRD IKPENILLTAAGKIQLADFGLAMRIAKGEDLLFSYVSDSDIRYLLAGLMRKKRKGSETEGWENL PDDLSCSTASRSSNFRSHFSLEGYARLKKRCKETEAVESVGSFKRRIAGVATAPPCGASSLVSS GRGLKRKIGCIDVSTQTGRKNKIDDDYVFGRNIGKGKFGSVRICKSRKNGTEFACKTLKKGEET VHREVEIMQHLSGHPRVVTLHAVYEESDCFHLVMELCSGGRLIDQMVKVGRYSEQRAANIFKDL MLVINYCHEMGVVHRDIKPENILLTAAGKIQLADFGLAMRIAK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |