Detail information of Zm00001d021188_circ_g.2


General Information
CircRNA Name Zm00001d021188_circ_g.2
ID in PlantcircBase zma_circ_009394
Alias Zm07circ00071, zma_circ_0002444, GRMZM2G070038_C1
Organism Zea mays
Position chr7: 145412808-145415520  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d021188
Parent gene annotation Flowering time control protein FPA
Parent gene strand +
Alternative splicing Zm00001d021188_circ_g.1
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d021188_T011:4
Zm00001d021188_T001:4
Zm00001d021188_T004:4
Zm00001d021188_T013:2
Zm00001d021188_T005:4
Zm00001d021188_T007:4
Zm00001d021188_T002:4
Zm00001d021188_T006:4
Zm00001d021188_T010:5
Zm00001d021188_T008:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAAGTACCAGGCGACACTCCAGTTAGCTCAAAACCTACTGCTTCAGTTACAGCAGCGTGGAT
CTGGAAATCAATCCTGAGACCTAATTATTGCTTCAGgctagagctgttagaaatctgtgggttg
gtggcattagcccatcgatttcaaaggaggagcttgagggggagtttctgaagttcggaaaagt
tgaaggtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2428
Transcript exons: 145412808-145413050,145413144-145413221,145413322-145414
064,145414157-145415520
GCTAGAGCTGTTAGAAATCTGTGGGTTGGTGGCATTAGCCCATCGATTTCAAAGGAGGAGCTTG
AGGGGGAGTTTCTGAAGTTCGGAAAAGTTGAAGGTGTTGCATTCTCCCAAGATCAGACTTCAGC
ATACATAGATTTTGAGAAGCTTGAAGACGCAATTTCTGCTCACAGATCCTTGAATGGAAAAATG
CTAGGTGGCAAGGAATTGTGTGTTGATTTCCAGAGGTCCAAGGGAAGAGCGGAATGGTCAGAAG
CTAGCAGCTTCAATGGTAGAGTACCAGGGCCAGTGGGTGATAAGAGAGGCAGTGGCCCTCTGAA
GAGTTCTGCTGGAGTGCGGATGCGAGAGGCACAGCCTACCAATGTTCTCTGGGTTGGTTTTCCA
GGTTCTTATAGAGTCATTGATGAGGAGGCACTTAAGCATGCCATGTCAGTATTCGGTGTCGTTA
CGAAGATAAAAGTTTTCCAGACAAGGCAGTATGCTTTTGTTGAGTTTGCAAATGTTGCGGAAGC
TTGTAATGCTAAGATGAATCTAGATGGTCATCTTTTCAATGATCCCAGGATTCAGATTCTTTTC
TCAAACAGTGGGCTTGCACCAAACAAATTGGACAACCCAACATCGGTTGCTGGATTTCCTAGTT
CAGAAATCTATTCCAGTGATGGTCGTCTAGGCCCTGGTATTGGCAGTGGAACTTTGCAAGGGTA
TGATCCACCAAGAGGAGGAAGAACAAGATATTACGATTATGCGGGTATGCCTACTCCAGGTGGT
ATCCTTTCACAACCTGAACCATTTGATCCAAGAGAAGCAAAAAGAATGAGGCTTGCTGCTGGTG
CTGACCCTTACGATGTAAGGGCAGGCAGCACAGGTCTTTATTCTGCTGGATACCGTCATCAGGG
CAGTTCTGTGCACGCTGAGGGAAGCTCAAGTCCTGTTATTCGAGTCCGGGGCACAGTGCATCGT
ACATCATACATTGAGCACTGTTGGCGTGGCAGTATTGCCAAAGGTGGATCCCCTGTTTGTCGTG
CTCGTTGTTTGCCTATAACAAAGGGCAGTGACATACCTTTACCGGATGTTATGAATTGCTCAGC
TCGGACTGGATTGGATATGCTGGCGAAGCACTACGCAGATGCCACTGGATTTGACATTGTCTTT
TTCTTGCCAGATAGTGAAGATGACTTTGTTTCTTATACTGAGTTCTTGCGTTACCTGGGCTCAA
AAAGTCGGGCAGGGGTTGTAAAAGTTGATGCAGGGACTACATTATTTTTGGTTCCACCATCAGA
TTTCCTAACAAATGTGTTACAAGTTGATGGTCCAGAGCGCCTTTATGGTGTGGTATTACACATT
CCACAAATCTCTGCTGCTGCTGCACTGAGGCCACAGTTAACTGGGACCGAACAACAACCTTACT
ATGATGAAAGGGGAACTCTGCCTACTTCACAAAGAAAGTATAGTATCATTTCTCCTAATGACAG
TGGCCACCTTGATGCTGATTATCGGACATCTTTGCATGAGGATTCAATGCATCGGTTGGGGCAT
ATTCCTGGAAGGCCTCGGGTGGATGAAGGACAAGCAGTTCAACCAGCTCTTGCAGGTTTTCCTG
CTAATCAAGCAGCTGGGCTGCAAGTACAATCTTCACTCAAGCCTGACATTATGGCTACATTAGC
AAAACTTCTGCCTAGTGTGCAATCGTCACCGCTGGTAAGTGGTCAGATGAATGCCATAGACAGA
ACATCGCAGATACAGGATCCATCCATGCTTTCAAAAGTATGGAATCCTGAAAACCAAGTTACTG
CTTCAAATTCATCCTTTGGGCAAATGGCTAATGTTCAGCATCCAGGACAGCAGTTTAGTGGCCA
AGCTTCAGCTGCTCATTTGACAAACTATGGGAACATGGTGAGTGCTCAGGAGCGCTCAATACAA
CATACTGCTTACAACCCTGAAGTTACTTTGAACTTGCCACCACCACCTCCACTTCCAACAATAC
CACACAGTTCTGCTACATTACAGTCTCAAGGTGGCCACAGTTTGCCCTCACAGACAAACCAGCA
ACTGTATCAGCCAGAGCAGTATTATGTGCCCCAAAACAACTATGGTCCATTAGTTCCAGTTAGC
CATTCTAACCTTCAAATCAGCAACACTAACAACCCCACCCTTACCATCCCACAAGTGAACCCTG
GACCTCCAACAAATAATCAGATTGGGAATTTGGCCCAGCCACAGCATTCTATGCCACTGCATGT
TGATAGAGCAAGTCAGGATTTCTCTTCTCAGGGGCAACAACAAAATCGTGGTCCTGGTGCTGCA
CAAGCTCCCGAGGAGGATAAAAGCAAGAAGTACCAGGCGACACTCCAGTTAGCTCAAAACCTAC
TGCTTCAGTTACAGCAGCGTGGATCTGGAAATCAATCCTGAGACCTAATTATTGCTTCAG

Genomic sequence GCTAGAGCTGTTAGAAATCTGTGGGTTGGTGGCATTAGCCCATCGATTTCAAAGGAGGAGCTTG
AGGGGGAGTTTCTGAAGTTCGGAAAAGTTGAAGGTGTTGCATTCTCCCAAGATCAGACTTCAGC
ATACATAGATTTTGAGAAGCTTGAAGACGCAATTTCTGCTCACAGATCCTTGAATGGAAAAATG
CTAGGTGGCAAGGAATTGTGTGTTGATTTCCAGAGGTCCAAGGGAAGAGCGGTGTGTGTCACAT
TGTTGGCTGTATTTGTATTTCCTCCATTAAATTTTTATAGTGTTTTTCTTGTTATAACTTGTTT
GTACTGATTTGTATAGGAATGGTCAGAAGCTAGCAGCTTCAATGGTAGAGTACCAGGGCCAGTG
GGTGATAAGAGAGGCAGTGGCCCTCTGAAGGTATGCACTGTTTAGAGATATAGTTCTCATCTGT
CATGTTGTTGGTCGTTCTCTTTTATCTGCTGATGTTGCTTACTATCATGTTCTGTTTACCTGGC
AGAGTTCTGCTGGAGTGCGGATGCGAGAGGCACAGCCTACCAATGTTCTCTGGGTTGGTTTTCC
AGGTTCTTATAGAGTCATTGATGAGGAGGCACTTAAGCATGCCATGTCAGTATTCGGTGTCGTT
ACGAAGATAAAAGTTTTCCAGACAAGGCAGTATGCTTTTGTTGAGTTTGCAAATGTTGCGGAAG
CTTGTAATGCTAAGATGAATCTAGATGGTCATCTTTTCAATGATCCCAGGATTCAGATTCTTTT
CTCAAACAGTGGGCTTGCACCAAACAAATTGGACAACCCAACATCGGTTGCTGGATTTCCTAGT
TCAGAAATCTATTCCAGTGATGGTCGTCTAGGCCCTGGTATTGGCAGTGGAACTTTGCAAGGGT
ATGATCCACCAAGAGGAGGAAGAACAAGATATTACGATTATGCGGGTATGCCTACTCCAGGTGG
TATCCTTTCACAACCTGAACCATTTGATCCAAGAGAAGCAAAAAGAATGAGGCTTGCTGCTGGT
GCTGACCCTTACGATGTAAGGGCAGGCAGCACAGGTCTTTATTCTGCTGGATACCGTCATCAGG
GCAGTTCTGTGCACGCTGAGGGAAGCTCAAGTCCTGTTATTCGAGTCCGGGGCACAGTGCATCG
TACATCATACATTGAGCACTGTTGGCGTGGCAGTATTGCCAAAGGTGGATCCCCTGTTTGTCGT
GCTCGTTGTTTGCCTATAACAAAGGGCAGTGACATACCTTTGTAAGTCCAAACATTGTTGCACA
AATATTTGCTCTGTATAAAGTTGAATTGTGTATGTTTATGACCTTACTCTGCTAATCTAAACTT
TGCAGACCGGATGTTATGAATTGCTCAGCTCGGACTGGATTGGATATGCTGGCGAAGCACTACG
CAGATGCCACTGGATTTGACATTGTCTTTTTCTTGCCAGATAGTGAAGATGACTTTGTTTCTTA
TACTGAGTTCTTGCGTTACCTGGGCTCAAAAAGTCGGGCAGGGGTTGTAAAAGTTGATGCAGGG
ACTACATTATTTTTGGTTCCACCATCAGATTTCCTAACAAATGTGTTACAAGTTGATGGTCCAG
AGCGCCTTTATGGTGTGGTATTACACATTCCACAAATCTCTGCTGCTGCTGCACTGAGGCCACA
GTTAACTGGGACCGAACAACAACCTTACTATGATGAAAGGGGAACTCTGCCTACTTCACAAAGA
AAGTATAGTATCATTTCTCCTAATGACAGTGGCCACCTTGATGCTGATTATCGGACATCTTTGC
ATGAGGATTCAATGCATCGGTTGGGGCATATTCCTGGAAGGCCTCGGGTGGATGAAGGACAAGC
AGTTCAACCAGCTCTTGCAGGTTTTCCTGCTAATCAAGCAGCTGGGCTGCAAGTACAATCTTCA
CTCAAGCCTGACATTATGGCTACATTAGCAAAACTTCTGCCTAGTGTGCAATCGTCACCGCTGG
TAAGTGGTCAGATGAATGCCATAGACAGAACATCGCAGATACAGGATCCATCCATGCTTTCAAA
AGTATGGAATCCTGAAAACCAAGTTACTGCTTCAAATTCATCCTTTGGGCAAATGGCTAATGTT
CAGCATCCAGGACAGCAGTTTAGTGGCCAAGCTTCAGCTGCTCATTTGACAAACTATGGGAACA
TGGTGAGTGCTCAGGAGCGCTCAATACAACATACTGCTTACAACCCTGAAGTTACTTTGAACTT
GCCACCACCACCTCCACTTCCAACAATACCACACAGTTCTGCTACATTACAGTCTCAAGGTGGC
CACAGTTTGCCCTCACAGACAAACCAGCAACTGTATCAGCCAGAGCAGTATTATGTGCCCCAAA
ACAACTATGGTCCATTAGTTCCAGTTAGCCATTCTAACCTTCAAATCAGCAACACTAACAACCC
CACCCTTACCATCCCACAAGTGAACCCTGGACCTCCAACAAATAATCAGATTGGGAATTTGGCC
CAGCCACAGCATTCTATGCCACTGCATGTTGATAGAGCAAGTCAGGATTTCTCTTCTCAGGGGC
AACAACAAAATCGTGGTCCTGGTGCTGCACAAGCTCCCGAGGAGGATAAAAGCAAGAAGTACCA
GGCGACACTCCAGTTAGCTCAAAACCTACTGCTTCAGTTACAGCAGCGTGGATCTGGAAATCAA
TCCTGAGACCTAATTATTGCTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.205885626
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress