Detail information of Os07g0596000_circ_g.3


General Information
CircRNA Name Os07g0596000_circ_g.3
ID in PlantcircBase osa_circ_034624
Alias NA
Organism Oryza sativa
Position chr7: 24255394-24256093  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os07g0596000
Parent gene annotation Zinc finger, DHHC-type domain containing protein. (Os07t0596000-
01)
Parent gene strand -
Alternative splicing Os07g0596000_circ_g.1 Os07g0596000_circ_g.2
Support reads 5
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0596000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCTTCCATACAATCTTAGGTACTTCTTTGATTTCAAGACACCTGGGTCAGCTGGGTCTGTTGC
AGCACACCAGATGTACATGAAGAAGACAAATGAAACcaagaatagggaagaagtcatcagaata
aaaaacctcatatagtttctttttccaatgcaattgttgagccactgttgagattgaggagaaa
aggagagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGAATAGGGAAGAAGTCATCAGAATAAAAAACCTCATATAGTTTCTTTTTCCAATGCAATTG
TTGAGCCACTGTTGAGATTGAGGAGAAAAGGAGAGTTACTAAATACTCGCTAATGGATGAATAA
GAAATGATCTGTTTCAGGATAACCTTACCCTGCAGTGATGATCAAAACCATCAACACATTTGTC
ACAAACTCTGCAGTGCTTACTGTACTTCAATACCTATAAAAAATTAGCAGCATATTAAAGAGTT
GAGTTGACAGAAGAAAAGCATAACTCAAGTACTCAACAGCTAGAAATACAAGAAGCATACCTCA
ACTTCACAGAGGCTGCAGAAAAACATTCCTTCCTCACTGGCTTGCTGCTCAGACCATTCCCGTG
GTTGGCAGCAGGAAAAAACAAGATAGAGAGGGTAGAAAATAATGAGAAAAACAGAGGAAGTTGA
ACTGCAGCAAGATGGGTTATTGTCTTTGTAGCGAGTTGTTGACTTTTCACTAGCAGCTGCAAAC
TCATGTTCTTGCTTTTCTCCAGTTCCCTCTACTTGCAACCCTGAATCTGAAATGCCATGTCTGA
ATTCCTTCGGATGCTTGTGTTTGCCGCTTCCATACAATCTTAGGTACTTCTTTGATTTCAAGAC
ACCTGGGTCAGCTGGGTCTGTTGCAGCACACCAGATGTACATGAAGAAGACAAATGAAAC
Conservation Information
Conserved circRNAs osi_circ_017294
PMCS 0.325351119
Functional Information
Coding potential Y
Potential coding position 24255958-24255433(+)
24256077-24255396(-)
Potential amino acid sequence MPCLNSFGCLCLPLPYNLRYFFDFKTPGSAGSVAAHQMYMKKTNETKNREEVIRIKNLI*(+)
MYIWCAATDPADPGVLKSKKYLRLYGSGKHKHPKEFRHGISDSGLQVEGTGEKQEHEFAAASEK
STTRYKDNNPSCCSSTSSVFLIIFYPLYLVFSCCQPREWSEQQASEEGMFFCSLCEVEVLKYSK
HCRVCDKCVDGFDHHCRWLNNCIGKRNYMRFFILMTSSLFLVSFVFFMYIWCAATDPADPGVLK
SKKYLRLYGSGKHKHPKEFRHGISDSGLQVEGTGEKQEHEFAAASEKSTTRYKDNNPSCCSSTS
SVFLIIFYPLYLVFSCCQPREWSEQQASEEGMFFCSLCEVEVLKYSKHCRVCDKCVDGFDHHCR
WLNNCIGKRNYMRFFILMTSSLFLVSFVFFMYIWCAATDPADPGVLKSKKYLRLYGSGKHKHPK
EFRHGISDSGLQVEGTGEKQEHEFAAASEKSTTRYKDNNPSCCSSTSSVFLIIFYPLYLVFSCC
QPREWSEQQASEEGMFFCSLCEVEVLKYSKHCRVCDKCVDGFDHHCRWLNNCIGKRNYMRFFIL
MTSSLFLVSFVFFMYIWCAATDPADPGVLKSKKYLRLYGSGKHKHPKEFRHGISDSGLQVEGTG
EKQEHEFAAASEKSTTRYKDNNPSCCSSTSSVFLIIFYPLYLVFSCCQPREWSEQQASEEGMFF
CSLCEVEVLKYSKHCRVCDKCVDGFDHHCRWLNNCIGKRNYMRFFILMTSSLFL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017