Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os07g0596000_circ_g.3 |
ID in PlantcircBase | osa_circ_034624 |
Alias | NA |
Organism | Oryza sativa |
Position | chr7: 24255394-24256093 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | Os07g0596000 |
Parent gene annotation |
Zinc finger, DHHC-type domain containing protein. (Os07t0596000- 01) |
Parent gene strand | - |
Alternative splicing | Os07g0596000_circ_g.1 Os07g0596000_circ_g.2 |
Support reads | 5 |
Tissues | seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os07t0596000-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_017294 |
PMCS | 0.325351119 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
24255958-24255433(+) 24256077-24255396(-) |
Potential amino acid sequence |
MPCLNSFGCLCLPLPYNLRYFFDFKTPGSAGSVAAHQMYMKKTNETKNREEVIRIKNLI*(+) MYIWCAATDPADPGVLKSKKYLRLYGSGKHKHPKEFRHGISDSGLQVEGTGEKQEHEFAAASEK STTRYKDNNPSCCSSTSSVFLIIFYPLYLVFSCCQPREWSEQQASEEGMFFCSLCEVEVLKYSK HCRVCDKCVDGFDHHCRWLNNCIGKRNYMRFFILMTSSLFLVSFVFFMYIWCAATDPADPGVLK SKKYLRLYGSGKHKHPKEFRHGISDSGLQVEGTGEKQEHEFAAASEKSTTRYKDNNPSCCSSTS SVFLIIFYPLYLVFSCCQPREWSEQQASEEGMFFCSLCEVEVLKYSKHCRVCDKCVDGFDHHCR WLNNCIGKRNYMRFFILMTSSLFLVSFVFFMYIWCAATDPADPGVLKSKKYLRLYGSGKHKHPK EFRHGISDSGLQVEGTGEKQEHEFAAASEKSTTRYKDNNPSCCSSTSSVFLIIFYPLYLVFSCC QPREWSEQQASEEGMFFCSLCEVEVLKYSKHCRVCDKCVDGFDHHCRWLNNCIGKRNYMRFFIL MTSSLFLVSFVFFMYIWCAATDPADPGVLKSKKYLRLYGSGKHKHPKEFRHGISDSGLQVEGTG EKQEHEFAAASEKSTTRYKDNNPSCCSSTSSVFLIIFYPLYLVFSCCQPREWSEQQASEEGMFF CSLCEVEVLKYSKHCRVCDKCVDGFDHHCRWLNNCIGKRNYMRFFILMTSSLFL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |