Plant Circular RNA Database

Detail information of Os02g0152800_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0152800_circ_g.2
					
						ID in PlantcircBase
						osa_circ_013178
					
						Alias
						Os_ciR8015
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 2915086-2917951  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os02g0152800						
					
						Parent gene annotation
						
							RNA polymerase Rpb1, domain 1 containing protein. (Os02t0152800-
01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0152800_circ_igg.1 Os02g0152800_circ_g.1 Os02g0152800_circ_g.3 Os02g0152800_circ_g.4 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0152800-01:7

General Information
CircRNA Name	Os02g0152800_circ_g.2
ID in PlantcircBase	osa_circ_013178
Alias	Os_ciR8015
Organism	Oryza sativa
Position	chr2: 2915086-2917951 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	find_circ
Parent gene	Os02g0152800
Parent gene annotation	RNA polymerase Rpb1, domain 1 containing protein. (Os02t0152800- 01)
Parent gene strand	-
Alternative splicing	Os02g0152800_circ_igg.1 Os02g0152800_circ_g.1 Os02g0152800_circ_g.3 Os02g0152800_circ_g.4
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0152800-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGGAGAACTTACAATCTCATCCTCAGTGGATAGGCTAAGCTTGATGCTCTTGATGGCACCTTCA
GCAACCGGAATTGCTGACTGGTCCTCCTCCATCTATccttgtagtgccccttagatgtatgtac
tgggcaatagagagctgtagatcacatgattcaacttcatgtgattcaaagtttggggatccag
ctcttgac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 874
Transcript exons: 2915086-2915241,2915330-2915488,2915583-2915753,2916419-
2916475,2916567-2916682,2916792-2916918,2917864-2917951
CCTTGTAGTGCCCCTTAGATGTATGTACTGGGCAATAGAGAGCTGTAGATCACATGATTCAACT
TCATGTGATTCAAAGTTTGGGGATCCAGCTCTTGACTTTTTTATCTGCTCTATTTTCTGAAGCA
CCTTCTTCAGCAGAGATATTGATATGTCATAGGACATGATGCTCTGCCCATCTGTAAATTCTGG
AATGTATAAACAATTTGGTGGCACGGGGAGGTATTTCATCACATATCCAGATTGAGCAATGTAA
CCACGAGCAGCTAGTTTCCTCTTCGTTTCTTCAGGAATTTTCTTCAATATATTGAGAGCCTCTT
CCGGGAGCAAGGTCCTGCAGTGGGAGGTTCCACCATGGTGAAATCCATACTTGTCAAGGAAGTT
CCATGAGCCTTCTGTCATGAATTTCCTAGGAGGCATTTTCAACTCTAAACGAAATGCACCATCT
GCTGTTTTGATTTCTTTCAAAGATAATGCCGGAAGATCCCGACAATAGTAGCATGACAATGCTG
ATGTGTTATCCTTTCCCTCTGTCTGTTTGACCTTTCCTTTCTTGACGCGGAGGCATTTCAAACA
TACCACATTTAATATCTGCCTCAGTTCCGTTACATGGCAAGGGTGATATATAGGCACAGGCAGC
TCAATGTACCCGAAATGCCCTTCGCATTTTCCATTTTCTGAGGCACCACAGGACTCGCATTTTC
CTGTCTCCAAAGGTAACCCAAGGAAGGGATTTCCGAGCTGACTAGGATGAGTGACAGGACAGTC
ATTTATAGAATAAGTACGAATCTCATCCTCAGTGGATAGGCTAAGCTTGATGCTCTTGATGGCA
CCTTCAGCAACCGGAATTGCTGACTGGTCCTCCTCCATCTAT
						
					

						Genomic sequence
						
							CCTTGTAGTGCCCCTTAGATGTATGTACTGGGCAATAGAGAGCTGTAGATCACATGATTCAACT
TCATGTGATTCAAAGTTTGGGGATCCAGCTCTTGACTTTTTTATCTGCTCTATTTTCTGAAGCA
CCTTCTTCAGCAGAGATATTGATATGTCCTGATATGAGAAGCAAGTATAATAAGCCATGACATA
GAATTGAACCAGTCAGGAAAATTATGAAGAACAAACGTGAGGAAGAACTCACATAGGACATGAT
GCTCTGCCCATCTGTAAATTCTGGAATGTATAAACAATTTGGTGGCACGGGGAGGTATTTCATC
ACATATCCAGATTGAGCAATGTAACCACGAGCAGCTAGTTTCCTCTTCGTTTCTTCAGGAATTT
TCTTCAATATATTGAGAGCCTAGCAAACGATACAGGAATGACAGACGATCATGTAGGTTGTTGG
ATATTTAGGAGCTTACAGAAGTCATAAAAATAAAGTAAATGAGATTAACCTCTTCCGGGAGCAA
GGTCCTGCAGTGGGAGGTTCCACCATGGTGAAATCCATACTTGTCAAGGAAGTTCCATGAGCCT
TCTGTCATGAATTTCCTAGGAGGCATTTTCAACTCTAAACGAAATGCACCATCTGCTGTTTTGA
TTTCTTTCAAAGATAATGCCGGAAGATCCTAAAGAAGTAAATGGCGATGAACATCAGTTGCCAC
TCATCCGGATTGTAAATGTTTATAGTGTCAAGGCTAGCATCTAATAAAAACAACTAAAGCTGTA
TACCAAAAGCCATACGCTAAAAAACTAATAAAAACATGATATAGTAATGCTTATGTCATGATTG
TTGGCCACATCTTACAAGTTCCAATAACACTCCATCATACAGCATAACTTTGATCCTGTGTACT
GTTTTCAACGACGACATGTTACTGAACAAACATAAAACTGAATACAGTGCTAGTCTGTCACTCA
TTCTCTGTGTAGACAAAAAAACTTTGCAATCAATGGTTTTATTGCAAAAGAATGCAACATAAAA
CTTATTCCGTAACTTAATATATAAGTGAAAGCATATGTATGGATAGGATTACTGAGTGAATACT
GCAACAGCTATGTCAGTAACATTGGCTATGTTTTGCCCAAGCAGATTTTGATCAATTTAAAACC
AACTAAGCTGTAACATCCGGACTATGTATGAGTGGATTAAACTTAAAACACTGGTATACTTGGT
TCTTCGAGAGGCATATGTTCCATATTCCTACTACTTATACATGTCAAACAATGAAATATTATGT
CTGTCTACTTCAAGGCAGAAGGGATATACAAAATTGTTGGGGTTGGAAAGTACCCGACAATAGT
AGCATGACAATGCTGATGTGTTATCCTTTCCCTCTGTCTGTTTGACCTGATACATGGTAAGATC
ACATTAATTATAAGCCAAAGTAAGACAATTGGATTTAGAAAATTAAGACTTAGCTGCTTTGACC
TGTATGTACCTTTCCTTTCTTGACGCGGAGGCATTTCAAACATACCACATTTAATATCTGCCTC
AGTTCCGTTACATGGCAAGGGTGATATATAGGCACAGGCAGCTCAATGTACCCGAAATGCCCTA
AATAAGCAGATAATTTTGGTTTTAAAGAAGAGAAAAGTGGATTGTCAGTTGCTACAGAACAATA
TCTTGGGCATGAAAAACTAATGAGAAGTCATCATGTGAGAACCTTCGCATTTTCCATTTTCTGA
GGCACCACAGGACTCGCATTTTCCTGTCTCCAAAGGTAACCCAAGGAAGGGATTTCCGAGCTGA
CTAGGATGAGTGACAGGACAGTCATTTATAGAATAAGTACGCTGCAGGACAGAAAGGTGTGTAT
CAGTCATGTTGGAAATAAAAAACATAGTATTACAGTAGGAAATATAAATGGGAACTGTGCAGGA
TATATCCTTGCCATATTCATGAGAAACAAAAAATACAAAAAAAAAGAAGGCTAAATTCATATGA
ATCAAGTAGAAGAATGCAACATCAAGTATTTAAATCCACAAAATGTAAAACAGCTCCGTTAGTT
AGCGAAAAAGCCCATGTATCAGCACTTCCAGATGCAAAAGAAAATGTCAGATTTCAGTATTAAC
TAACAAACAACATTCATCTTTACATTGCAAAAGTAAAGGTCAAAAAGAAAAGCTCTCATAGCAA
CACTCATCTTGATAAAATTAATCTTACAAATTCAAATTTTGCATTGCGATTGAATAGCACAGAT
CATGCATCATAGGTAAATCTAATTGAATGATATCAAATATAAAACTTGACCTGACGGGGGAGGG
AGGGTAAGACCTTCTCACGCATGTCAAGAAAACCCCCTAACCCCCCTTACACAGCGGCACAGGC
AGGTCAAGAAAACCCCCGAACCCTTGCCCCACCCTTACACAGCAGCACCGTAACCCGTGAAAAT
AGGCTGGTCCTTAGACCTATGCTTTGGCGTGGGACAAACGAGGGGATTTTTTTTCAACCCCAGC
CTGAAATTCGCTCCCACAAGGAGTCGAACCCAGGACCTGAGGAGTGCTACTAGAGCCACCTAAC
CAACTCAGCTAGAGGTCCATTCGCAAATGATATCAAATATAAATGATAGAGAAAAGGAGGGTTT
CTAGATCTCATCATCAAGAGTAGTTACATCAATCATATGCTCCCTTATCAGACGGTACTGTCTC
TAATGGATCACAATGACCAAGTTGTCGCTTCTGCATGCATCTCTTTCTGCAAGCATTGCTGGTA
AAAAGCATCAGAGAAGGAGAACTTACAATCTCATCCTCAGTGGATAGGCTAAGCTTGATGCTCT
TGATGGCACCTTCAGCAACCGGAATTGCTGACTGGTCCTCCTCCATCTAT
						
					

			
		

Sequences
Splice junction sequence	AGGAGAACTTACAATCTCATCCTCAGTGGATAGGCTAAGCTTGATGCTCTTGATGGCACCTTCA GCAACCGGAATTGCTGACTGGTCCTCCTCCATCTATccttgtagtgccccttagatgtatgtac tgggcaatagagagctgtagatcacatgattcaacttcatgtgattcaaagtttggggatccag ctcttgac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 874 Transcript exons: 2915086-2915241,2915330-2915488,2915583-2915753,2916419- 2916475,2916567-2916682,2916792-2916918,2917864-2917951 CCTTGTAGTGCCCCTTAGATGTATGTACTGGGCAATAGAGAGCTGTAGATCACATGATTCAACT TCATGTGATTCAAAGTTTGGGGATCCAGCTCTTGACTTTTTTATCTGCTCTATTTTCTGAAGCA CCTTCTTCAGCAGAGATATTGATATGTCATAGGACATGATGCTCTGCCCATCTGTAAATTCTGG AATGTATAAACAATTTGGTGGCACGGGGAGGTATTTCATCACATATCCAGATTGAGCAATGTAA CCACGAGCAGCTAGTTTCCTCTTCGTTTCTTCAGGAATTTTCTTCAATATATTGAGAGCCTCTT CCGGGAGCAAGGTCCTGCAGTGGGAGGTTCCACCATGGTGAAATCCATACTTGTCAAGGAAGTT CCATGAGCCTTCTGTCATGAATTTCCTAGGAGGCATTTTCAACTCTAAACGAAATGCACCATCT GCTGTTTTGATTTCTTTCAAAGATAATGCCGGAAGATCCCGACAATAGTAGCATGACAATGCTG ATGTGTTATCCTTTCCCTCTGTCTGTTTGACCTTTCCTTTCTTGACGCGGAGGCATTTCAAACA TACCACATTTAATATCTGCCTCAGTTCCGTTACATGGCAAGGGTGATATATAGGCACAGGCAGC TCAATGTACCCGAAATGCCCTTCGCATTTTCCATTTTCTGAGGCACCACAGGACTCGCATTTTC CTGTCTCCAAAGGTAACCCAAGGAAGGGATTTCCGAGCTGACTAGGATGAGTGACAGGACAGTC ATTTATAGAATAAGTACGAATCTCATCCTCAGTGGATAGGCTAAGCTTGATGCTCTTGATGGCA CCTTCAGCAACCGGAATTGCTGACTGGTCCTCCTCCATCTAT
Genomic sequence	CCTTGTAGTGCCCCTTAGATGTATGTACTGGGCAATAGAGAGCTGTAGATCACATGATTCAACT TCATGTGATTCAAAGTTTGGGGATCCAGCTCTTGACTTTTTTATCTGCTCTATTTTCTGAAGCA CCTTCTTCAGCAGAGATATTGATATGTCCTGATATGAGAAGCAAGTATAATAAGCCATGACATA GAATTGAACCAGTCAGGAAAATTATGAAGAACAAACGTGAGGAAGAACTCACATAGGACATGAT GCTCTGCCCATCTGTAAATTCTGGAATGTATAAACAATTTGGTGGCACGGGGAGGTATTTCATC ACATATCCAGATTGAGCAATGTAACCACGAGCAGCTAGTTTCCTCTTCGTTTCTTCAGGAATTT TCTTCAATATATTGAGAGCCTAGCAAACGATACAGGAATGACAGACGATCATGTAGGTTGTTGG ATATTTAGGAGCTTACAGAAGTCATAAAAATAAAGTAAATGAGATTAACCTCTTCCGGGAGCAA GGTCCTGCAGTGGGAGGTTCCACCATGGTGAAATCCATACTTGTCAAGGAAGTTCCATGAGCCT TCTGTCATGAATTTCCTAGGAGGCATTTTCAACTCTAAACGAAATGCACCATCTGCTGTTTTGA TTTCTTTCAAAGATAATGCCGGAAGATCCTAAAGAAGTAAATGGCGATGAACATCAGTTGCCAC TCATCCGGATTGTAAATGTTTATAGTGTCAAGGCTAGCATCTAATAAAAACAACTAAAGCTGTA TACCAAAAGCCATACGCTAAAAAACTAATAAAAACATGATATAGTAATGCTTATGTCATGATTG TTGGCCACATCTTACAAGTTCCAATAACACTCCATCATACAGCATAACTTTGATCCTGTGTACT GTTTTCAACGACGACATGTTACTGAACAAACATAAAACTGAATACAGTGCTAGTCTGTCACTCA TTCTCTGTGTAGACAAAAAAACTTTGCAATCAATGGTTTTATTGCAAAAGAATGCAACATAAAA CTTATTCCGTAACTTAATATATAAGTGAAAGCATATGTATGGATAGGATTACTGAGTGAATACT GCAACAGCTATGTCAGTAACATTGGCTATGTTTTGCCCAAGCAGATTTTGATCAATTTAAAACC AACTAAGCTGTAACATCCGGACTATGTATGAGTGGATTAAACTTAAAACACTGGTATACTTGGT TCTTCGAGAGGCATATGTTCCATATTCCTACTACTTATACATGTCAAACAATGAAATATTATGT CTGTCTACTTCAAGGCAGAAGGGATATACAAAATTGTTGGGGTTGGAAAGTACCCGACAATAGT AGCATGACAATGCTGATGTGTTATCCTTTCCCTCTGTCTGTTTGACCTGATACATGGTAAGATC ACATTAATTATAAGCCAAAGTAAGACAATTGGATTTAGAAAATTAAGACTTAGCTGCTTTGACC TGTATGTACCTTTCCTTTCTTGACGCGGAGGCATTTCAAACATACCACATTTAATATCTGCCTC AGTTCCGTTACATGGCAAGGGTGATATATAGGCACAGGCAGCTCAATGTACCCGAAATGCCCTA AATAAGCAGATAATTTTGGTTTTAAAGAAGAGAAAAGTGGATTGTCAGTTGCTACAGAACAATA TCTTGGGCATGAAAAACTAATGAGAAGTCATCATGTGAGAACCTTCGCATTTTCCATTTTCTGA GGCACCACAGGACTCGCATTTTCCTGTCTCCAAAGGTAACCCAAGGAAGGGATTTCCGAGCTGA CTAGGATGAGTGACAGGACAGTCATTTATAGAATAAGTACGCTGCAGGACAGAAAGGTGTGTAT CAGTCATGTTGGAAATAAAAAACATAGTATTACAGTAGGAAATATAAATGGGAACTGTGCAGGA TATATCCTTGCCATATTCATGAGAAACAAAAAATACAAAAAAAAAGAAGGCTAAATTCATATGA ATCAAGTAGAAGAATGCAACATCAAGTATTTAAATCCACAAAATGTAAAACAGCTCCGTTAGTT AGCGAAAAAGCCCATGTATCAGCACTTCCAGATGCAAAAGAAAATGTCAGATTTCAGTATTAAC TAACAAACAACATTCATCTTTACATTGCAAAAGTAAAGGTCAAAAAGAAAAGCTCTCATAGCAA CACTCATCTTGATAAAATTAATCTTACAAATTCAAATTTTGCATTGCGATTGAATAGCACAGAT CATGCATCATAGGTAAATCTAATTGAATGATATCAAATATAAAACTTGACCTGACGGGGGAGGG AGGGTAAGACCTTCTCACGCATGTCAAGAAAACCCCCTAACCCCCCTTACACAGCGGCACAGGC AGGTCAAGAAAACCCCCGAACCCTTGCCCCACCCTTACACAGCAGCACCGTAACCCGTGAAAAT AGGCTGGTCCTTAGACCTATGCTTTGGCGTGGGACAAACGAGGGGATTTTTTTTCAACCCCAGC CTGAAATTCGCTCCCACAAGGAGTCGAACCCAGGACCTGAGGAGTGCTACTAGAGCCACCTAAC CAACTCAGCTAGAGGTCCATTCGCAAATGATATCAAATATAAATGATAGAGAAAAGGAGGGTTT CTAGATCTCATCATCAAGAGTAGTTACATCAATCATATGCTCCCTTATCAGACGGTACTGTCTC TAATGGATCACAATGACCAAGTTGTCGCTTCTGCATGCATCTCTTTCTGCAAGCATTGCTGGTA AAAAGCATCAGAGAAGGAGAACTTACAATCTCATCCTCAGTGGATAGGCTAAGCTTGATGCTCT TGATGGCACCTTCAGCAACCGGAATTGCTGACTGGTCCTCCTCCATCTAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.320695355

Conservation Information
Conserved circRNAs	NA
PMCS	0.320695355

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							2917896-2915100(+)
2917949-2917915(-)
						
						Potential amino acid sequence
						
							MLLMAPSATGIADWSSSIYPCSAP*(+)
MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGAS
ENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSCYYCR
DLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRTLLPEEALNILKK
IPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKKVLQKIEQIK
KSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRIDGGGPVSNSGC*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	2917896-2915100(+) 2917949-2917915(-)
Potential amino acid sequence	MLLMAPSATGIADWSSSIYPCSAP(+) MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGAS ENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSCYYCR DLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRTLLPEEALNILKK IPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKKVLQKIEQIK KSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRIDGGGPVSNSGC(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os02g0152800_circ_g.2

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