Detail information of Zm00001d044281_circ_g.1


General Information
CircRNA Name Zm00001d044281_circ_g.1
ID in PlantcircBase zma_circ_007884
Alias zma_circ_0001364, GRMZM2G440943_C1
Organism Zea mays
Position chr3: 223987663-223990519  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d044281
Parent gene annotation Chromatin modification-related protein EAF1 B
Parent gene strand +
Alternative splicing Zm00001d044281_circ_ag.1 Zm00001d044281_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d044281_T022:6
Zm00001d044281_T053:6
Zm00001d044281_T039:6
Zm00001d044281_T041:6
Zm00001d044281_T005:6
Zm00001d044281_T018:6
Zm00001d044281_T014:6
Zm00001d044281_T026:6
Zm00001d044281_T030:6
Zm00001d044281_T002:6
Zm00001d044281_T031:6
Zm00001d044281_T036:6
Zm00001d044281_T012:4
Zm00001d044281_T023:3
Zm00001d044281_T007:6
Zm00001d044281_T049:6
Zm00001d044281_T008:3
Zm00001d044281_T015:6
Zm00001d044281_T032:5
Zm00001d044281_T054:3
Zm00001d044281_T020:6
Zm00001d044281_T052:6
Zm00001d044281_T029:5
Zm00001d044281_T019:6
Zm00001d044281_T033:6
Zm00001d044281_T050:6
Zm00001d044281_T006:6
Zm00001d044281_T038:6
Zm00001d044281_T025:5
Zm00001d044281_T017:6
Zm00001d044281_T044:6
Zm00001d044281_T027:6
Zm00001d044281_T003:6
Zm00001d044281_T001:6
Zm00001d044281_T016:6
Zm00001d044281_T013:6
Zm00001d044281_T046:6
Zm00001d044281_T024:6
Zm00001d044281_T028:6
Zm00001d044281_T048:6
Zm00001d044281_T056:3
Zm00001d044281_T051:6
Zm00001d044281_T040:6
Zm00001d044281_T034:6
Zm00001d044281_T055:6
Zm00001d044281_T009:6
Zm00001d044281_T042:6
Zm00001d044281_T021:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCAATGGCCTCTCTTGCTGCATCACAAATGAGCAACATGGCAAATCCTACGAGGGTTATAAAA
ATCAGCACCCGTGGAAGAAAAAGTAAAGGACTCAAGgcaaatctcttttatggcgtagcacccg
gtgcaatgcaggcatacagggagtctatggaccgtctccttatttataataacaaggtaacgag
gtactcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAAATCTCTTTTATGGCGTAGCACCCGGTGCAATGCAGGCATACAGGGAGTCTATGGACCGTC
TCCTTATTTATAATAACAAGGTAACGAGGTACTCGTGGTACTCTAAGATTTATTGAATTACGCC
CTTGCATTTTTTGATCATCAGGTTATTTGTTAAGGGCGTGTTTGCTTCCTGGCATCCCAGGCGA
GCTGCCTGCCTCCGAAACCGGATGCCTAAGGGCGATGCTCGTGCCAGGCATAGCAGTCTGGGAG
CAAAGCAAACATGCCCTTAAATGTCGAAAACTTGAGCACACACTGAAACATTTATATTTTTGGT
AGAACACATGGCCAAGTGTTTCACTTGTGTATCATTTTGCAATGGTTAACAGTAATACTATGTT
ACTAAATTGTTTTTGTCTTTCTCGCTTTCTTTCTCTCTCTCTGGTTCTTATGGCTCTTGTTGAG
CATCATTCACTAGTGTACCTCAACATGCTTAAGAGTAAAGGCTTTGTTGTTGCTGTCGTTTCAC
TTGTGATTGATCTTCAATTGCTGGTTTCGAAGAAAGTTTCATGTGTCAATGTTAAGCAGTGGAG
TTACAAAATGCACTAGTCTCTTCCCAAGTATCTGCTTTATGTATTTTGTTTGGTATTATGGGAT
ATAGAATCTTGGGTGTTAATAGCTACTTTGTCAACACTAAATTGCTAACAAGAAATGGCTATAA
GATACATGTTGACACAATACTGTTATGTCCGTTTACATTTCTGCCCTTTTCTTTGTGGTAAAAA
CGGACTTATATATTTGTTCCAGAAAATTGGTGACACTGTACTCAAGGATGATTATGAGCCATCA
ACATATGCATCTGTCACAGGTATTATTATGTGTTCCATATTCTTACCAACATGAACTGTATACC
ACTATTCTCTAATTTACTGTGTTATTATGTGTTTTTTTCATGTTCTTGCCAACCCTAAATTTGG
TCTAGATGTCCCTATGGAGAATGCATATGGAGATGACGAAAGTGAGGCACACACCTACTTATTG
CCTGGAGCTTATAATGGTGGTTTGGCATCAAAAAATAGTCACAAAAAGAAGCACCATTTGCCTC
AGAGGATGAATGGCGCAAGGTCATATGAAATTGGTGTTGACAGTCCTTACGAACCACTGTATTT
GGAAAGTAAATCAGGAAACCAGCAACTCTTATCGAATGGCAAACAAACAGACTTCCTCTCCATT
CCTATAAAACGCATCCGCACAGCAGCTAGGCAGCGGGTTGTGAGTCCATTTCCTGCTGGTGCTT
CTGGGACCCCTCAATTCACAAATAAAACGGACGCATCTAGTGGAGATACAAACTCCTGTCAAGA
TGATCAAAGTTCATTACATGGAGGGTCATTTTCTAGGAAGAATGCAGATATAGAGTCCACTGTT
GATTTTGACAGGCAATTGTTGTATGATGGTAGTGAGGTGTCGACAAAATCTAAAAAGAAGAAAA
AGACTAAGCACCCAGGGTACAAGGCACTACCAAATGTGTCCGAATCTTGTTCGTTGAGGGCTCC
TGGAAAGGTTAATGCTTTGTGCAAAATTTTAATTATATTTGTTGTTGGCTTTGTTTGATAGAGG
AAGTTTCTGGTGTTTTTTTCAGGGCAATTATGATCATAGATCTCAGATCGATATGATAGCTCAG
TATGAGCAGGTATATTATTTCTGCTATATTTGATTATATTGCTTGGAATAGATCTTTGCAACCA
AGTTTATTAAGGCGTCACTTAAGCGGTAAGGCGAGCTTGGACTCGTAAGGCGTCTGTTGCCATC
AAGGCGAGGCACAGCGGCGGCGTGCTGGGGAGAGGGAGAGAGAATAGTGCGGCGGCGGCGGCGG
CGCGTGGGAGAGGGACAGAGAGGAGAACGACGGCGGCGGTTGAGAGAGCGGCTGAGAGCCTGAG
AGAGAGAGAGACAGAGAGAGAGAGGATAGGCAGCTGGTTAGATTAACCCTGGTATGTTGGGCTG
GGTTGGGCTGTACCTGGGTTTTTTTTTCTTGTTTTGTTTCTCTCTTCTACTAGGCTGAAATGGG
CCTAATAGGCTTTATGATTGTGCTAGCTTACTTATTAAGATTTATGTATATATATATATATATA
CATAAATAAAATATTTGTTCCTATTTTTTATATTTATCTAAAAAATAATTTTCGTCGCCTTGTT
TTACGCTTCATTGTCTAAAAAGGTAAAAGGGGGTCGATCGCCTTATGTCACCTTGATAACTATG
TTTGCAACTACATCTTATATCAAGATTTAAGTTTTGTGGTGGATATTCATACTTCTATTTAGTC
ACAAATTGCTCAACAATGGTCTGAAATGATTTAAGGTTCTGAAAACAAATATTTTTACTAATTG
AATTTAGACGTGCATCATGTAGTGTAGTGCTCTTCTGTGTGTTCTAATGCTGAGATCTGGGAAT
TCGACAAGATAACCTAACATCACTATACTTAGTTTCTAACATGTTTTCTCTATTCTGTACCAGA
AGGATTATATTAAAAAGAGACAGGAGACAAATGGGAATTTTGGTACTCTCTTATCTATTCTTCG
GATAGCATACTTCATCATCATATTTTCACTAATGTCACATGGGCACAACTTGTTCTTATCATTT
GAATGTGAATGGCTCCTCACATGTTAGGTGTTATTGATTTATCAACAGTGGTTAATGGCCTACA
TGCTGCTAAGAAGCCTAAATTGTTGAATCAAGCACCAGATATTTCACTGGAAGCTCTTAAACCA
ATTGGTCCAATGGCCTCTCTTGCTGCATCACAAATGAGCAACATGGCAAATCCTACGAGGGTTA
TAAAAATCAGCACCCGTGGAAGAAAAAGTAAAGGACTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.066104022
Functional Information
Coding potential Y
Potential coding position 223987697-223990516(+)
Potential amino acid sequence MQAYRESMDRLLIYNNKKIGDTVLKDDYEPSTYASVTDVPMENAYGDDESEAHTYLLPGAYNGG
LASKNSHKKKHHLPQRMNGARSYEIGVDSPYEPLYLESKSGNQQLLSNGKQTDFLSIPIKRIRT
AARQRVVSPFPAGASGTPQFTNKTDASSGDTNSCQDDQSSLHGGSFSRKNADIESTVDFDRQLL
YDGSEVSTKSKKKKKTKHPGYKALPNVSESCSLRAPGKGNYDHRSQIDMIAQYEQKDYIKKRQE
TNGNFGVIDLSTVVNGLHAAKKPKLLNQAPDISLEALKPIGPMASLAASQMSNMANPTRVIKIS
TRGRKSKGLKANLFYGVAPGAMQAYRESMDRLLIYNNKKIGDTVLKDDYEPSTYASVTDVPMEN
AYGDDESEAHTYLLPGAYNGGLASKNSHKKKHHLPQRMNGARSYEIGVDSPYEPLYLESKSGNQ
QLLSNGKQTDFLSIPIKRIRTAARQRVVSPFPAGASGTPQFTNKTDASSGDTNSCQDDQSSLHG
GSFSRKNADIESTVDFDRQLLYDGSEVSTKSKKKKKTKHPGYKALPNVSESCSLRAPGKGNYDH
RSQIDMIAQYEQKDYIKKRQETNGNFGVIDLSTVVNGLHAAKKPKLLNQAPDISLEALKPIGPM
ASLAASQMSNMANPTRVIKISTRGRKSKGLKANLFYGVAPGAMQAYRESMDRLLIYNNKKIGDT
VLKDDYEPSTYASVTDVPMENAYGDDESEAHTYLLPGAYNGGLASKNSHKKKHHLPQRMNGARS
YEIGVDSPYEPLYLESKSGNQQLLSNGKQTDFLSIPIKRIRTAARQRVVSPFPAGASGTPQFTN
KTDASSGDTNSCQDDQSSLHGGSFSRKNADIESTVDFDRQLLYDGSEVSTKSKKKKKTKHPGYK
ALPNVSESCSLRAPGKGNYDHRSQIDMIAQYEQKDYIKKRQETNGNFGVIDLSTVVNGLHAAKK
PKLLNQAPDISLEALKPIGPMASLAASQMSNMANPTRVIKISTRGRKSKGLKANLFYGVAPGAM
QAYRESMDRLLIYNNKKIGDTVLKDDYEPSTYASVTDVPMENAYGDDESEAHTYLLPGAYNGGL
ASKNSHKKKHHLPQRMNGARSYEIGVDSPYEPLYLESKSGNQQLLSNGKQTDFLSIPIKRIRTA
ARQRVVSPFPAGASGTPQFTNKTDASSGDTNSCQDDQSSLHGGSFSRKNADIESTVDFDRQLLY
DGSEVSTKSKKKKKTKHPGYKALPNVSESCSLRAPGKGNYDHRSQIDMIAQYEQKDYIKKRQET
NGNFGVIDLSTVVNGLHAAKKPKLLNQAPDISLEALKPIGPMASLAASQMSNMANPTRVIKIST
RGRKSKGLK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019