Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d044281_circ_g.1 |
ID in PlantcircBase | zma_circ_007884 |
Alias | zma_circ_0001364, GRMZM2G440943_C1 |
Organism | Zea mays |
Position | chr3: 223987663-223990519 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d044281 |
Parent gene annotation |
Chromatin modification-related protein EAF1 B |
Parent gene strand | + |
Alternative splicing | Zm00001d044281_circ_ag.1 Zm00001d044281_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d044281_T022:6 Zm00001d044281_T053:6 Zm00001d044281_T039:6 Zm00001d044281_T041:6 Zm00001d044281_T005:6 Zm00001d044281_T018:6 Zm00001d044281_T014:6 Zm00001d044281_T026:6 Zm00001d044281_T030:6 Zm00001d044281_T002:6 Zm00001d044281_T031:6 Zm00001d044281_T036:6 Zm00001d044281_T012:4 Zm00001d044281_T023:3 Zm00001d044281_T007:6 Zm00001d044281_T049:6 Zm00001d044281_T008:3 Zm00001d044281_T015:6 Zm00001d044281_T032:5 Zm00001d044281_T054:3 Zm00001d044281_T020:6 Zm00001d044281_T052:6 Zm00001d044281_T029:5 Zm00001d044281_T019:6 Zm00001d044281_T033:6 Zm00001d044281_T050:6 Zm00001d044281_T006:6 Zm00001d044281_T038:6 Zm00001d044281_T025:5 Zm00001d044281_T017:6 Zm00001d044281_T044:6 Zm00001d044281_T027:6 Zm00001d044281_T003:6 Zm00001d044281_T001:6 Zm00001d044281_T016:6 Zm00001d044281_T013:6 Zm00001d044281_T046:6 Zm00001d044281_T024:6 Zm00001d044281_T028:6 Zm00001d044281_T048:6 Zm00001d044281_T056:3 Zm00001d044281_T051:6 Zm00001d044281_T040:6 Zm00001d044281_T034:6 Zm00001d044281_T055:6 Zm00001d044281_T009:6 Zm00001d044281_T042:6 Zm00001d044281_T021:6 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.066104022 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
223987697-223990516(+) |
Potential amino acid sequence |
MQAYRESMDRLLIYNNKKIGDTVLKDDYEPSTYASVTDVPMENAYGDDESEAHTYLLPGAYNGG LASKNSHKKKHHLPQRMNGARSYEIGVDSPYEPLYLESKSGNQQLLSNGKQTDFLSIPIKRIRT AARQRVVSPFPAGASGTPQFTNKTDASSGDTNSCQDDQSSLHGGSFSRKNADIESTVDFDRQLL YDGSEVSTKSKKKKKTKHPGYKALPNVSESCSLRAPGKGNYDHRSQIDMIAQYEQKDYIKKRQE TNGNFGVIDLSTVVNGLHAAKKPKLLNQAPDISLEALKPIGPMASLAASQMSNMANPTRVIKIS TRGRKSKGLKANLFYGVAPGAMQAYRESMDRLLIYNNKKIGDTVLKDDYEPSTYASVTDVPMEN AYGDDESEAHTYLLPGAYNGGLASKNSHKKKHHLPQRMNGARSYEIGVDSPYEPLYLESKSGNQ QLLSNGKQTDFLSIPIKRIRTAARQRVVSPFPAGASGTPQFTNKTDASSGDTNSCQDDQSSLHG GSFSRKNADIESTVDFDRQLLYDGSEVSTKSKKKKKTKHPGYKALPNVSESCSLRAPGKGNYDH RSQIDMIAQYEQKDYIKKRQETNGNFGVIDLSTVVNGLHAAKKPKLLNQAPDISLEALKPIGPM ASLAASQMSNMANPTRVIKISTRGRKSKGLKANLFYGVAPGAMQAYRESMDRLLIYNNKKIGDT VLKDDYEPSTYASVTDVPMENAYGDDESEAHTYLLPGAYNGGLASKNSHKKKHHLPQRMNGARS YEIGVDSPYEPLYLESKSGNQQLLSNGKQTDFLSIPIKRIRTAARQRVVSPFPAGASGTPQFTN KTDASSGDTNSCQDDQSSLHGGSFSRKNADIESTVDFDRQLLYDGSEVSTKSKKKKKTKHPGYK ALPNVSESCSLRAPGKGNYDHRSQIDMIAQYEQKDYIKKRQETNGNFGVIDLSTVVNGLHAAKK PKLLNQAPDISLEALKPIGPMASLAASQMSNMANPTRVIKISTRGRKSKGLKANLFYGVAPGAM QAYRESMDRLLIYNNKKIGDTVLKDDYEPSTYASVTDVPMENAYGDDESEAHTYLLPGAYNGGL ASKNSHKKKHHLPQRMNGARSYEIGVDSPYEPLYLESKSGNQQLLSNGKQTDFLSIPIKRIRTA ARQRVVSPFPAGASGTPQFTNKTDASSGDTNSCQDDQSSLHGGSFSRKNADIESTVDFDRQLLY DGSEVSTKSKKKKKTKHPGYKALPNVSESCSLRAPGKGNYDHRSQIDMIAQYEQKDYIKKRQET NGNFGVIDLSTVVNGLHAAKKPKLLNQAPDISLEALKPIGPMASLAASQMSNMANPTRVIKIST RGRKSKGLK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Ma et al., 2021b;Zhang et al., 2019 |