Detail information of Os02g0680400_circ_g.2


General Information
CircRNA Name Os02g0680400_circ_g.2
ID in PlantcircBase osa_circ_015971
Alias NA
Organism Oryza sativa
Position chr2: 27766062-27769580  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0680400
Parent gene annotation Similar to CaaX processing zinc-metallo endoprotease. (Os02t0680
400-01);Similar to CAAX prenyl protease 1 homolog. (Os02t0680400
-02)
Parent gene strand +
Alternative splicing Os02g0680400_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0680400-01:8
Os02t0680400-02:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAATTTGGAGGATATACGCTAGTAAGGAACTCCAAAGACCTTTTTGAAAGTTTTGGTTTCGAG
GATCAGCCTGTAATAATTGGGCTGATCATATTTCAGaaatctggagagctagcaaccaatgctg
gcctaaatgctgaaaatgagatactacacactcttgcattcttagcaggtgtcatgatttggtc
acaggtat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATACTACACACTCTTG
CATTCTTAGCAGGTGTCATGATTTGGTCACAGGTATAGAATAATTACTTGTACCTGCCAAGCAT
CTTATATGTTTATTGCACATATATTTTTACCTTCATTGCATTCAAAATTAAATTAGCTTCCAGT
TGTCTTCCAGCACATTGAGTTAGGTATAAACTGAAGCCTTAGCTTTCCATGATTGACAATCGCT
AGCTTTAGTTTAACACAAATGGTGGTTGCTGGATTGTCTATGTCGTTAGTTACTGCATCAAAAG
TTATTATTAGTCAGGACTGAAGCGCATAGCATAGTGACACCTATGAAACTATTGACATGCATTT
CCCTATTCTGCTTTTGGCCCTGACAGACATGAACAGCCACTCTAGTTCTTCTCTGACTGGACCA
TTTTTCAACTTGAAAAATAGTGGCAAAAGTTGCCTGTATTTTCTTAAATTTGCATGTATCAAGA
TCAGGATATTTGAGATAAGAGTCTTATCTCAAATATAGCGCTTCGCGACCGCTATAACAGCCCG
CTATTGACTTTGTTGGACCATTATAACGCTTAAATGTTGTTCTTCATTTATGGATTGTAGAACT
TTACATTGTTTATCTTATTTATCTTATATATCTATATGTTATTTCATACTTTTTATGTTATGAA
ATATAGGAGTAATTAAAAATGTATGAATTTGATGTTAATATTGATATATTTATGGTTATTTTCT
TATATTTGCTATTGGAACTTAGCGTCCGCAATAGCGCCCGCTATCCGCAATCCGCTACACAGAC
ACTAATCCGCTAACAACCCGCTATACACTATTTATTACCTTGGATAAGAGTAATCATCCTTTTG
CCCTTTTCTGTTGAGTACATCCAGTGACTTTTACATGTTAATCTACACCTATGTTCATAGTTGC
ATACTGATATTGATTGTTTAGGTCTACATCTACTAGAACTTTGGCATAGTGTTCTCTTATGGTG
AATCAACTTCTTTTGCAAGCCATCAGCTAAAACATGCCAACTCCACTATTTGATGTGAAACACT
GATACATACTTCATGCAATGCAGATCACAGACTTACCATTCTCTCTTTATTCAACATTTGTTAT
TGAAGCTAAACATGGTTTTAACAAGGTATGTTTGTGTTCTCAATTTTAGCACCTCAGTTATTAT
ATGTTTTAACATTTGAATGGTGTTCACCTGCAAGATTAGTGAAGTACAAAAGTATCTTGGCTTA
TGAATTTGCTATGTTCTAATCCCCAACATATTTATTCTGAACCTCTAGCTTTGGACTTTTTTCA
GCAAACTATTTGGCTCTTCATTAGGGACATGATCAAAGGGATTTTGCTATCCATCTTACTTGGA
CCTCCTATTGTGGCTGCTATTATCATCATAGTACAGGTATCTCCTGTCTTTCTACCACACACTT
CTTCATTGTTGGCTAGTATCTGGAGAACAGGCTTACCTGTTTTTTGCGGGATCTGGGCCCGAAT
ACCACAAACTCGTAGAAGTGTGTGAACTGATTAGTTTATTTCTCTGTGCTTCAGAATGGAGGGC
CCTACCTGGCAATATATCTATGGGGTTTTATGTTTGCATTATCTCTTGTGATGATGACAATATA
CCCCATCGTGATAGCACCTCTGTTCAACAAATTCACTCCGGTTAGTATCTTTTTCTGTTGTAGA
GCATACCTAGTATGCTGTAATTAGTTCACTTGTCTGTTTTTTGTGTGAGAAAGGTACATGCATC
CATTGTGCATCTTCTAATTCGTGTCCCATGTTATTGAACTACGTTGACCTATTAATAAGCCGTA
CGGATGGCAAAAGCTCTTTTGAGGTATAACTAGATATGGTTGCACATATTTTAACAGCTTCCAG
AAGGAGTACTCAGAGAGAAAATAGAGAAATTAGCAGCTTCACTCAGTTTTCCATTGAAAAAGCT
TTTCGTGGTGGATGGGTCTACCAGATCAAGCCACAGTAATGTATGTTGATTACTCTACCTTCAG
GGTTGTGGTTCATTGATAACTGATAGTTTGTAATTTTCTGTGTGCTTTGAACTGACAATTTTCT
TTCAGGCTTACATGTATGGGTTTTTCAAGAACAAGCGCATTGTTCTCTATGACACGTTGATTCA
GCAGGTTATATGCTAAGTTGTTTAGTTTCATTATAATTTTGAATTACATGCATGAAACTCACCT
GGATCCTTTTGTCGGTTTCAGTGTAGTAGTGAGGATGAAATAGTTTCTGTTATTGCACATGAAC
TTGGGCACTGGAAACTCAACCACACTGTGTATTCCTTTGTAGCTGTCCAGGTATTCTCTTTGAT
GCCATGATAAACTTTGCATAACAATTGTTCATCTATTTTGTTGATATAGTATTTGTGTACTTCT
GGGATAAAAAATGTGTATGTAATCCGAAATGTCCCGTTGGTTCTCCTAAAAGGACATGCAGCAT
TTTTGTGCCCCTCCCCCCAACTTTATCATTGTATCATGTAATGCATGAATGAGAACTATTGTTT
TGGTTACAGATAAGAAAAGTGCATAAATGCAAGCATTTGATCACTAGGACAGGGTAGCTAATTT
CAATATTGTTTCTGGTAAAGAATTTACTATTAAGAAAAGTGACTTCCCTGTTTGTTCAAAGTAA
ATACTGCATGACCATAGCATGAAAATCCTGACTGGTGCTTAACTGGTCACTCTGCTGGTACTTG
GTTTTACTGGTCTACCCGGTCCAATTGGTGAATTGTCAAAAATATTATATTCAAACGTATTTTA
AGTCTGATCCCGCAACTAATACACTTTTTTTCAAATATGCATAATATCGCCAAAGAATAATATT
TAGCTCAATCCATTTGGCTAGAAGCCCAACATACTTGTGAGATGGGACCCAAGTTTGGTTTGAC
TCAAAAAACTATTTCCCCTATTTTTACCATAACTTTCTTTTTTTCTGACCGAACCAAACTAGGA
TCTGGTCCTGGGTTTTTCCAGTTGGACCCGCCTGGCCCCTTTTTTTGTACTGTGTTTGACATGC
CTGCTTCTATGATGGATATGATGTGTGATGACTGATGAGTGGCTACTAGGTTATGCTAAGCATG
CCATTTCCTTAGATGGATGACTATTTAACAAAACAAACCTTGGCATAAGGTTAGCAGAAAAAGT
TACTATTCAATATCCAGAGCAAATAAACAGTGTTTAGCATGTAAGTAGGATTAATGGTTCTTTT
TCGAAATTGAATCTGTGATACAGTCCCTTTGCATCTGTTGCTGGAGAGTACTGCTGCTTTTTAG
TACAAAGAAGGAAAAAAAACAGATAAATCTTCTTTTGTGTGTTGAGAGTTTTTTCACTTCGTCT
CCTTTTTATGCAGCTCCTTATGTTCCTACAATTTGGAGGATATACGCTAGTAAGGAACTCCAAA
GACCTTTTTGAAAGTTTTGGTTTCGAGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.119239711
Functional Information
Coding potential Y
Potential coding position 27766144-27769577(+)
27766146-27769579(-)
27766130-27769572(-)
Potential amino acid sequence MIWSQITDLPFSLYSTFVIEAKHGFNKQTIWLFIRDMIKGILLSILLGPPIVAAIIIIVQNGGP
YLAIYLWGFMFALSLVMMTIYPIVIAPLFNKFTPLPEGVLREKIEKLAASLSFPLKKLFVVDGS
TRSSHSNAYMYGFFKNKRIVLYDTLIQQCSSEDEIVSVIAHELGHWKLNHTVYSFVAVQLLMFL
QFGGYTLVRNSKDLFESFGFEDQPVIIGLIIFQKSGELATNAGLNAENEILHTLAFLAGVMIWS
QITDLPFSLYSTFVIEAKHGFNKQTIWLFIRDMIKGILLSILLGPPIVAAIIIIVQNGGPYLAI
YLWGFMFALSLVMMTIYPIVIAPLFNKFTPLPEGVLREKIEKLAASLSFPLKKLFVVDGSTRSS
HSNAYMYGFFKNKRIVLYDTLIQQCSSEDEIVSVIAHELGHWKLNHTVYSFVAVQLLMFLQFGG
YTLVRNSKDLFESFGFEDQPVIIGLIIFQKSGELATNAGLNAENEILHTLAFLAGVMIWSQITD
LPFSLYSTFVIEAKHGFNKQTIWLFIRDMIKGILLSILLGPPIVAAIIIIVQNGGPYLAIYLWG
FMFALSLVMMTIYPIVIAPLFNKFTPLPEGVLREKIEKLAASLSFPLKKLFVVDGSTRSSHSNA
YMYGFFKNKRIVLYDTLIQQCSSEDEIVSVIAHELGHWKLNHTVYSFVAVQLLMFLQFGGYTLV
RNSKDLFESFGFEDQPVIIGLIIFQKSGELATNAGLNAENEILHTLAFLAGVMIWSQITDLPFS
LYSTFVIEAKHGFNKQTIWLFIRDMIKGILLSILLGPPIVAAIIIIVQNGGPYLAIYLWGFMFA
LSLVMMTIYPIVIAPLFNKFTPLPEGVLREKIEKLAASLSFPLKKLFVVDGSTRSSHSNAYMYG
FFKNKRIVLYDTLIQQCSSEDEIVSVIAHELGHWKLNHTVYSFVAVQLLMFLQFGGYTLVRNSK
DLFESFGFEDQPVIIGLIIFQ(+)
MTPAKNARVCSISFSAFRPALVASSPDF*(-)
MQECVVSHFQHLGQHWLLALQISEI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017