Detail information of AT2G27150_circ_g.2


General Information
CircRNA Name AT2G27150_circ_g.2
ID in PlantcircBase ath_circ_015144
Alias 2:11604682-11604900
Organism Arabidpsis thaliana
Position chr2: 11604682-11604900  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G27150
Parent gene annotation Abscisic-aldehyde oxidase
Parent gene strand +
Alternative splicing NA
Support reads 1/3/1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G27150.4:1
AT2G27150.6:1
AT2G27150.2:1
AT2G27150.1:1
AT2G27150.5:1
AT2G27150.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTATTGCTACATGTCTTGGCATTCAAGAGCATAACGTGAGAGTCATCACTAGAAGAGTTGGT
GGTGGCTTTGGTGGTAAAGCTGTAAAGTCAATGCCTttgaggctagggtcacagtacttcttct
atatggagccacaaacagcacttgccttgccagacgaagacaattgtgtcaaggtatttagttc
atctcaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 219
Transcript exons: 11604682-11604900
TTGAGGCTAGGGTCACAGTACTTCTTCTATATGGAGCCACAAACAGCACTTGCCTTGCCAGACG
AAGACAATTGTGTCAAGGTATTTAGTTCATCTCAAGCACCTGAGTACGTACATTCGGTTATTGC
TACATGTCTTGGCATTCAAGAGCATAACGTGAGAGTCATCACTAGAAGAGTTGGTGGTGGCTTT
GGTGGTAAAGCTGTAAAGTCAATGCCT

Genomic sequence TTGAGGCTAGGGTCACAGTACTTCTTCTATATGGAGCCACAAACAGCACTTGCCTTGCCAGACG
AAGACAATTGTGTCAAGGTATTTAGTTCATCTCAAGCACCTGAGTACGTACATTCGGTTATTGC
TACATGTCTTGGCATTCAAGAGCATAACGTGAGAGTCATCACTAGAAGAGTTGGTGGTGGCTTT
GGTGGTAAAGCTGTAAAGTCAATGCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.385777092
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020