Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d044364_circ_g.3 |
ID in PlantcircBase | zma_circ_007896 |
Alias | zma_circ_0001376 |
Organism | Zea mays |
Position | chr3: 226189970-226195073 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d044364 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d044364_T004:8 Zm00001d044364_T001:8 Zm00001d044364_T002:8 Zm00001d044364_T005:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.081256136 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
226195009-226189975(+) 226190242-226195070(+) |
Potential amino acid sequence |
MGCMGPCISSNGALCSSSCEVQVN*(+) MCMCHLPENDPMRSEVLHMKQSLQRYGHIMSADEHYTRWQEVEADCEDDPEGLALRLAAKGAVS AALEVAESASLSIDLRRELQGRQLVKLLITDPLNGGGPAAASRFLSTLRDSNDALPVAIGAMNL LPDLRSKQLLVHFFLKRTVGNLSDAEIARLNLWALGLRVLSLLPLPSQQRCSSLHEHPQLIVEV LLMMKQLQSASLILKEFSSLRDDKLIIAYAKKAISINVSSAPRERRSNISASRAKQKKATTPAK TNFVQSFGNFQREARKAFSWVPRDSGTKTPPKDILRKRKSSGSGGDRSSWEAMPGLQEERTPVY PSEAQERLPFVSAPDEWVLTGDPDKDDATRSSHKYETSPDITLFKALISLCTNESVAAKGALEL CMTQMKVVLSSQQLPLDASMDNIARAYHATETYVQALSYAKNLFKKLVGSSDLSSGSERSKEVD DVSVDTGSSSTGSQYLDELSDFLTQADMWLGRAELLQSLLGSGIIASLDDIADKESSSRLRDRL VNDERYSMAVYTCRKCKIDAVPVWVAWGHALVRMEHYAQARVKFKLISEGKLSDALAVSDRCLR NGASDNLLQLLIEQKEEKGPGTGQIHPYGSHSLGNDTSQYCLRLRDKKVAAQLALKYLHSWDLD AATNVLTMCMCHLPENDPMRSEVLHMKQSLQRYGHIMSADEHYTRWQEVEADCEDDPEGLALRL AAKGAVSAALEVAESASLSIDLRRELQGRQLVKLLITDPLNGGGPAAASRFLSTLRDSNDALPV AIGAMNLLPDLRSKQLLVHFFLKRTVGNLSDAEIARLNLWALGLRVLSLLPLPSQQRCSSLHEH PQLIVEVLLMMKQLQSASLILKEFSSLRDDKLIIAYAKKAISINVSSAPRERRSNISASRAKQK KATTPAKTNFVQSFGNFQREARKAFSWVPRDSGTKTPPKDILRKRKSSGSGGDRSSWEAMPGLQ EERTPVYPSEAQERLPFVSAPDEWVLTGDPDKDDATRSSHKYETSPDITLFKALISLCTNESVA AKGALELCMTQMKVVLSSQQLPLDASMDNIARAYHATETYVQALSYAKNLFKKLVGSSDLSSGS ERSKEVDDVSVDTGSSSTGSQYLDELSDFLTQADMWLGRAELLQSLLGSGIIASLDDIADKESS SRLRDRLVNDERYSMAVYTCRKCKIDAVPVWVAWGHALVRMEHYAQARVKFKLISEGKLSDALA VSDRCLRNGASDNLLQLLIEQKEEKGPGTGQIHPYGSHSLGNDTSQYCLRLRDKKVAAQLALKY LHSWDLDAATNVLTMCMCHLPENDPMRSEVLHMKQSLQRYGHIMSADEHYTRWQEVEADCEDDP EGLALRLAAKGAVSAALEVAESASLSIDLRRELQGRQLVKLLITDPLNGGGPAAASRFLSTLRD SNDALPVAIGAMNLLPDLRSKQLLVHFFLKRTVGNLSDAEIARLNLWALGLRVLSLLPLPSQQR CSSLHEHPQLIVEVLLMMKQLQSASLILKEFSSLRDDKLIIAYAKKAISINVSSAPRERRSNIS ASRAKQKKATTPAKTNFVQSFGNFQREARKAFSWVPRDSGTKTPPKDILRKRKSSGSGGDRSSW EAMPGLQEERTPVYPSEAQERLPFVSAPDEWVLTGDPDKDDATRSSHKYETSPDITLFKALISL CTNESVAAKGALELCMTQMKVVLSSQQLPLDASMDNIARAYHATETYVQALSYAKNLFKKLVGS SDLSSGSERSKEVDDVSVDTGSSSTGSQYLDELSDFLTQADMWLGRAELLQSLLGSGIIASLDD IADKESSSRLRDRLVNDERYSMAVYTCRKCKIDAVPVWVAWGHALVRMEHYAQARVKFKLISEG KLSDALAVSDRCLRNGASDNLLQLLIEQKEEKGPGTGQIHPYGSHSLGNDTSQYCLRLRDKKVA AQLALKYLHSWDLDAATNVLTMCMCHLPENDPMRSEVLHMKQSLQRYGHIMSADEHYTRWQEVE ADCEDDPEGLALRLAAKGAVSAALEVAESASLSIDLRRELQGRQLVKLLITDPLNGGGPAAASR FLSTLRDSNDALPVAIGAMNLLPDLRSKQLLVHFFLKRTVGNLSDAEIARLNLWALGLRVLSLL PLPSQQRCSSLHEHPQLIVEVLLMMKQLQSASLILKEFSSLRDDKLIIAYAKKAISINVSSAPR ERRSNISASRAKQKKATTPAKTNFVQSFGNFQREARKAFSWVPRDSGTKTPPKDILRKRKSSGS GGDRSSWEAMPGLQEERTPVYPSEAQERLPFVSAPDEWVLTGDPDKDDATRSSHKYETSPDITL FKALISLCTNESVAAKGALELCMTQMKVVLSSQQLPLDASMDNIARAYHATETYVQALSYAKNL FKKLVGSSDLSSGSERSKEVDDVSVDTGSSSTGSQYLDELSDFLTQADMWLGRAELLQSLLGSG IIASLDDIADKESSSRLRDRLVNDERYSMAVYTCRKCKIDAVPVWVAWGHALVRMEHYAQARVK F(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |