Detail information of Zm00001d044364_circ_g.3


General Information
CircRNA Name Zm00001d044364_circ_g.3
ID in PlantcircBase zma_circ_007896
Alias zma_circ_0001376
Organism Zea mays
Position chr3: 226189970-226195073  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d044364
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d044364_T004:8
Zm00001d044364_T001:8
Zm00001d044364_T002:8
Zm00001d044364_T005:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTGATCGATTTTCAGATTGATGCTGTACCAGTATGGGTTGCATGGGGCCATGCATTAGTTCG
AATGGAGCACTATGCTCAAGCTCGTGTGAAGTTCAAgttaattagtgaaggaaaattaagtgat
gctcttgctgtgtctgatcgttgtttgcgcaatggagcatctgataatttgcttcagttgctca
tcgaacag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1941
Transcript exons: 226189970-226190285,226190527-226190604,226190742-226191
032,226191110-226191307,226191473-226191955,226194337-22
6194498,226194579-226194908,226194991-226195073
GTTAATTAGTGAAGGAAAATTAAGTGATGCTCTTGCTGTGTCTGATCGTTGTTTGCGCAATGGA
GCATCTGATAATTTGCTTCAGTTGCTCATCGAACAGAAGGAAGAAAAAGGTCCAGGCACAGGAC
AAATTCATCCATATGGATCTCACAGTCTTGGGAATGATACTTCTCAGTACTGCTTGAGGCTGAG
AGACAAAAAAGTTGCAGCTCAGCTCGCTCTAAAGTACTTGCACAGCTGGGACCTTGATGCTGCA
ACCAATGTTCTAACTATGTGCATGTGCCACTTACCTGAGAATGATCCTATGCGCAGTGAGGTGT
TGCACATGAAGCAATCTTTACAGAGGTATGGCCATATCATGAGTGCTGATGAGCACTACACTAG
ATGGCAAGAGGTGGAAGCTGATTGTGAAGATGACCCAGAGGGCTTGGCACTCCGTCTTGCTGCC
AAAGGAGCTGTTTCCGCTGCTTTGGAGGTTGCTGAAAGTGCCTCTTTATCAATTGATTTGCGGA
GGGAGTTGCAAGGCCGTCAGCTTGTCAAACTGCTAATCACTGATCCACTTAATGGCGGAGGCCC
AGCTGCAGCTTCAAGATTTCTGTCAACTTTAAGGGATTCCAATGATGCTCTTCCTGTAGCCATT
GGTGCTATGAATTTATTACCTGACCTGCGTTCAAAGCAGCTTCTTGTGCATTTCTTCCTCAAGC
GTACAGTTGGGAATCTATCAGATGCTGAGATTGCACGGCTTAATTTGTGGGCATTAGGTCTCCG
TGTTCTTTCCTTATTGCCATTGCCATCACAACAGCGTTGTTCTTCTCTGCACGAACACCCTCAG
TTGATCGTAGAAGTACTGTTGATGATGAAACAACTCCAGTCTGCTTCTTTGATTTTGAAAGAAT
TTTCTTCCTTGAGGGATGATAAGTTAATTATTGCGTATGCTAAAAAAGCAATCTCAATTAACGT
TAGCTCAGCTCCTAGGGAACGTCGATCGAATATCTCTGCATCAAGGGCAAAACAAAAAAAGGCT
ACAACTCCAGCTAAAACAAATTTTGTGCAAAGTTTTGGTAACTTTCAGAGAGAAGCACGCAAAG
CATTCTCATGGGTCCCCCGTGATAGTGGCACTAAAACACCCCCAAAAGATATCCTTCGGAAAAG
AAAGAGTTCAGGCTCTGGAGGTGATAGATCCTCTTGGGAAGCAATGCCTGGTTTACAGGAGGAG
CGGACACCTGTATATCCTTCTGAGGCGCAAGAAAGACTTCCTTTTGTCTCTGCTCCTGATGAGT
GGGTGCTGACGGGAGATCCTGACAAGGATGATGCAACTCGTTCATCCCATAAATATGAAACCTC
TCCTGATATCACACTGTTCAAGGCATTGATATCCTTGTGCACCAATGAGTCAGTAGCTGCAAAA
GGTGCACTTGAATTGTGTATGACTCAGATGAAGGTTGTGCTAAGCTCCCAACAGTTGCCTCTTG
ATGCCTCTATGGACAACATAGCCCGGGCTTATCATGCAACGGAAACTTATGTACAGGCACTCTC
TTATGCTAAGAATCTATTTAAAAAGCTCGTTGGTAGTAGTGATTTGTCAAGTGGCTCTGAAAGA
AGTAAGGAAGTTGATGATGTTTCTGTGGACACTGGCAGTTCAAGCACTGGGAGCCAGTATCTGG
ATGAGCTGTCTGATTTCCTAACTCAAGCAGACATGTGGTTAGGGCGTGCAGAGCTTCTTCAAAG
CCTGCTGGGATCAGGTATTATTGCCTCGCTGGATGATATAGCTGACAAAGAATCTTCAAGTAGA
CTACGTGACAGATTGGTCAACGATGAACGGTACAGCATGGCTGTATATACTTGTAGAAAGTGCA
AGATTGATGCTGTACCAGTATGGGTTGCATGGGGCCATGCATTAGTTCGAATGGAGCACTATGC
TCAAGCTCGTGTGAAGTTCAA

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.081256136
Functional Information
Coding potential Y
Potential coding position 226195009-226189975(+)
226190242-226195070(+)
Potential amino acid sequence MGCMGPCISSNGALCSSSCEVQVN*(+)
MCMCHLPENDPMRSEVLHMKQSLQRYGHIMSADEHYTRWQEVEADCEDDPEGLALRLAAKGAVS
AALEVAESASLSIDLRRELQGRQLVKLLITDPLNGGGPAAASRFLSTLRDSNDALPVAIGAMNL
LPDLRSKQLLVHFFLKRTVGNLSDAEIARLNLWALGLRVLSLLPLPSQQRCSSLHEHPQLIVEV
LLMMKQLQSASLILKEFSSLRDDKLIIAYAKKAISINVSSAPRERRSNISASRAKQKKATTPAK
TNFVQSFGNFQREARKAFSWVPRDSGTKTPPKDILRKRKSSGSGGDRSSWEAMPGLQEERTPVY
PSEAQERLPFVSAPDEWVLTGDPDKDDATRSSHKYETSPDITLFKALISLCTNESVAAKGALEL
CMTQMKVVLSSQQLPLDASMDNIARAYHATETYVQALSYAKNLFKKLVGSSDLSSGSERSKEVD
DVSVDTGSSSTGSQYLDELSDFLTQADMWLGRAELLQSLLGSGIIASLDDIADKESSSRLRDRL
VNDERYSMAVYTCRKCKIDAVPVWVAWGHALVRMEHYAQARVKFKLISEGKLSDALAVSDRCLR
NGASDNLLQLLIEQKEEKGPGTGQIHPYGSHSLGNDTSQYCLRLRDKKVAAQLALKYLHSWDLD
AATNVLTMCMCHLPENDPMRSEVLHMKQSLQRYGHIMSADEHYTRWQEVEADCEDDPEGLALRL
AAKGAVSAALEVAESASLSIDLRRELQGRQLVKLLITDPLNGGGPAAASRFLSTLRDSNDALPV
AIGAMNLLPDLRSKQLLVHFFLKRTVGNLSDAEIARLNLWALGLRVLSLLPLPSQQRCSSLHEH
PQLIVEVLLMMKQLQSASLILKEFSSLRDDKLIIAYAKKAISINVSSAPRERRSNISASRAKQK
KATTPAKTNFVQSFGNFQREARKAFSWVPRDSGTKTPPKDILRKRKSSGSGGDRSSWEAMPGLQ
EERTPVYPSEAQERLPFVSAPDEWVLTGDPDKDDATRSSHKYETSPDITLFKALISLCTNESVA
AKGALELCMTQMKVVLSSQQLPLDASMDNIARAYHATETYVQALSYAKNLFKKLVGSSDLSSGS
ERSKEVDDVSVDTGSSSTGSQYLDELSDFLTQADMWLGRAELLQSLLGSGIIASLDDIADKESS
SRLRDRLVNDERYSMAVYTCRKCKIDAVPVWVAWGHALVRMEHYAQARVKFKLISEGKLSDALA
VSDRCLRNGASDNLLQLLIEQKEEKGPGTGQIHPYGSHSLGNDTSQYCLRLRDKKVAAQLALKY
LHSWDLDAATNVLTMCMCHLPENDPMRSEVLHMKQSLQRYGHIMSADEHYTRWQEVEADCEDDP
EGLALRLAAKGAVSAALEVAESASLSIDLRRELQGRQLVKLLITDPLNGGGPAAASRFLSTLRD
SNDALPVAIGAMNLLPDLRSKQLLVHFFLKRTVGNLSDAEIARLNLWALGLRVLSLLPLPSQQR
CSSLHEHPQLIVEVLLMMKQLQSASLILKEFSSLRDDKLIIAYAKKAISINVSSAPRERRSNIS
ASRAKQKKATTPAKTNFVQSFGNFQREARKAFSWVPRDSGTKTPPKDILRKRKSSGSGGDRSSW
EAMPGLQEERTPVYPSEAQERLPFVSAPDEWVLTGDPDKDDATRSSHKYETSPDITLFKALISL
CTNESVAAKGALELCMTQMKVVLSSQQLPLDASMDNIARAYHATETYVQALSYAKNLFKKLVGS
SDLSSGSERSKEVDDVSVDTGSSSTGSQYLDELSDFLTQADMWLGRAELLQSLLGSGIIASLDD
IADKESSSRLRDRLVNDERYSMAVYTCRKCKIDAVPVWVAWGHALVRMEHYAQARVKFKLISEG
KLSDALAVSDRCLRNGASDNLLQLLIEQKEEKGPGTGQIHPYGSHSLGNDTSQYCLRLRDKKVA
AQLALKYLHSWDLDAATNVLTMCMCHLPENDPMRSEVLHMKQSLQRYGHIMSADEHYTRWQEVE
ADCEDDPEGLALRLAAKGAVSAALEVAESASLSIDLRRELQGRQLVKLLITDPLNGGGPAAASR
FLSTLRDSNDALPVAIGAMNLLPDLRSKQLLVHFFLKRTVGNLSDAEIARLNLWALGLRVLSLL
PLPSQQRCSSLHEHPQLIVEVLLMMKQLQSASLILKEFSSLRDDKLIIAYAKKAISINVSSAPR
ERRSNISASRAKQKKATTPAKTNFVQSFGNFQREARKAFSWVPRDSGTKTPPKDILRKRKSSGS
GGDRSSWEAMPGLQEERTPVYPSEAQERLPFVSAPDEWVLTGDPDKDDATRSSHKYETSPDITL
FKALISLCTNESVAAKGALELCMTQMKVVLSSQQLPLDASMDNIARAYHATETYVQALSYAKNL
FKKLVGSSDLSSGSERSKEVDDVSVDTGSSSTGSQYLDELSDFLTQADMWLGRAELLQSLLGSG
IIASLDDIADKESSSRLRDRLVNDERYSMAVYTCRKCKIDAVPVWVAWGHALVRMEHYAQARVK
F(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b