Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G05150_circ_g.2 |
ID in PlantcircBase | ath_circ_019793 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr3: 1442071-1442814 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, circRNA_finder |
Parent gene | AT3G05150 |
Parent gene annotation |
Major facilitator superfamily protein |
Parent gene strand | + |
Alternative splicing | AT3G05150_circ_g.1 AT3G05150_circ_g.3 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT3G05150.2:5 AT3G05150.3:5 AT3G05150.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.165080656 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1442113-1442811(+) |
Potential amino acid sequence |
MDLIDKKNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVVLTALGA TLLIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKAHGLALDIIPALAVSGVLEYLASLAHLPKA TLMDLIDKKNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVVLTAL GATLLIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKAHGLALDIIPALAVSGVLEYLASLAHLP KATLMDLIDKKNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVVLT ALGATLLIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKAHGLALDIIPALAVSGVLEYLASLAH LPKATLMDLIDKKNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVV LTALGATLLIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKAHGLALDIIPALAVSGVL(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |