Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08125_circ_g.1 |
ID in PlantcircBase | ath_circ_001285 |
Alias | At_ciR2643 |
Organism | Arabidpsis thaliana |
Position | chr1: 2539852-2540163 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, find_circ |
Parent gene | AT1G08125 |
Parent gene annotation |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Parent gene strand | - |
Alternative splicing | AT1G08125_circ_g.2 AT1G08125_circ_g.3 AT1G08125_circ_g.4 AT1G08125_circ_g.5 AT1G08125_circ_g.6 AT1G08125_circ_g.7 |
Support reads | 3/18 |
Tissues | leaf/root, inflorescences, seed, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G08125.4:1 AT1G08125.3:1 AT1G08125.1:1 AT1G08125.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.404500815 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2540164-2539854(-) |
Potential amino acid sequence |
MDGEYQDPSIHLYIMAQKSAAESSGNVSRDEVVIDTDETKCETKVPTGECHKRVEEEAVVTHGP RLNEDSLLMRLRDGKLSEWEMRRYGTVAAQLLRDVKIDVQMDGEYQDPSIHLYIMAQKSAAESS GNVSRDEVVIDTDETKCETKVPTGECHKRVEEEAVVTHGPRLNEDSLLMRLRDGKLSEWEMRRY GTVAAQLLRDVKIDVQMDGEYQDPSIHLYIMAQKSAAESSGNVSRDEVVIDTDETKCETKVPTG ECHKRVEEEAVVTHGPRLNEDSLLMRLRDGKLSEWEMRRYGTVAAQLLRDVKIDVQMDGEYQDP SIHLYIMAQKSAAESSGNVSRDEVVIDTDETKCETKVPTGECHKRVEEEAVVTHGPRLNEDSLL MRLRDGKLSEWEMRRYGTVAAQLLRDVKIDVQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |