Plant Circular RNA Database

Detail information of AT1G36180_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT1G36180_circ_g.1
					
						ID in PlantcircBase
						ath_circ_005809
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 13550288-13553229  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							AT1G36180						
					
						Parent gene annotation
						
							Acetyl-CoA carboxylase 2
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G36160_circ_g.2 AT1G36160_circ_g.3 AT1G36160_circ_g.4 1_circ_ag.5 1_circ_ag.6 AT1G36160_circ_g.7 1_circ_ag.8 1_circ_ag.9 1_circ_ag.10 AT1G36160_circ_g.11 1_circ_ag.12 1_circ_ag.13 AT1G36160_circ_g.14 1_circ_ag.15 AT1G36160_circ_g.16 1_circ_ag.17 AT1G36160_circ_g.18 1_circ_ag.19 AT1G36160_circ_g.20 1_circ_ag.21 1_circ_ag.22 AT1G36160_circ_g.23 AT1G36160_circ_g.24 AT1G36160_circ_g.25 AT1G36160_circ_g.26 1_circ_ag.27 AT1G36160_circ_g.28 AT1G36160_circ_g.29 1_circ_ag.30 AT1G36160_circ_g.31 AT1G36160_circ_g.32 1_circ_ag.33 AT1G36160_circ_g.34 AT1G36160_circ_g.35 1_circ_ag.36 AT1G36160_circ_g.37 1_circ_ag.38 AT1G36160_circ_g.39 AT1G36160_circ_g.40 AT1G36160_circ_g.41 1_circ_ag.42 AT1G36160_circ_g.43 1_circ_ag.44 1_circ_ag.45 AT1G36180_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G36180.1:15

General Information
CircRNA Name	AT1G36180_circ_g.1
ID in PlantcircBase	ath_circ_005809
Alias	NA
Organism	Arabidpsis thaliana
Position	chr1: 13550288-13553229 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	AT1G36180
Parent gene annotation	Acetyl-CoA carboxylase 2
Parent gene strand	+
Alternative splicing	AT1G36160_circ_g.2 AT1G36160_circ_g.3 AT1G36160_circ_g.4 1_circ_ag.5 1_circ_ag.6 AT1G36160_circ_g.7 1_circ_ag.8 1_circ_ag.9 1_circ_ag.10 AT1G36160_circ_g.11 1_circ_ag.12 1_circ_ag.13 AT1G36160_circ_g.14 1_circ_ag.15 AT1G36160_circ_g.16 1_circ_ag.17 AT1G36160_circ_g.18 1_circ_ag.19 AT1G36160_circ_g.20 1_circ_ag.21 1_circ_ag.22 AT1G36160_circ_g.23 AT1G36160_circ_g.24 AT1G36160_circ_g.25 AT1G36160_circ_g.26 1_circ_ag.27 AT1G36160_circ_g.28 AT1G36160_circ_g.29 1_circ_ag.30 AT1G36160_circ_g.31 AT1G36160_circ_g.32 1_circ_ag.33 AT1G36160_circ_g.34 AT1G36160_circ_g.35 1_circ_ag.36 AT1G36160_circ_g.37 1_circ_ag.38 AT1G36160_circ_g.39 AT1G36160_circ_g.40 AT1G36160_circ_g.41 1_circ_ag.42 AT1G36160_circ_g.43 1_circ_ag.44 1_circ_ag.45 AT1G36180_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G36180.1:15

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCTTTATCAGCTAGAATTGAAATACAAGGAATTTGAGATTATCTCCAAAACCTCCCTGACCCCA
GATTTCCCTGCCAAACTCTTAAAAGGCATCCTTGAGatcatagaggaaggtccaatcaccgtag
ctccgcaagaaaccatcaagaaacttgaacaagcagctagaaggttagctaagagtgttaacta
tgttggag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATCATAGAGGAAGGTCCAATCACCGTAGCTCCGCAAGAAACCATCAAGAAACTTGAACAAGCAG
CTAGAAGGTTAGCTAAGAGTGTTAACTATGTTGGAGCTGCTACTGTTGAGTATCTCTATAGTAT
GGACACTGGGGAGTACTACTTCTTAGAGCTTAACCCTCGCTTACAGGTTTCTTTCCATACACAC
CATAGCTACCTTTCCTTTTCGAATGAAAGATTTTGGTCTTGAAAATCGAATGTTCGATGTCAGG
TTGAGCATCCTGTAACCGAGTGGATCGCCGAGGTTAATCTTCCTGCTGCTCAAGTTGCTGTTGG
GATGGGAATTCCTCTCTGGCAAATCCCTGGTATGGTCTTGCATCCTGGGGCAGTGGTTTTTTTT
TTCTAGGCTATATGCTTATGTAATGTACTGTTTCGCTTTTGTTTGATAGAGATAAGACGGTTTT
ACGGTATGGAACATGGTGGAGGATATGATTCTTGGAGGAAAACATCGGTTGTAGCCTCTCCTTT
TGATTTTGATGAAGCTGAATCTTTAAGGCCAAAAGGTCATTGTGTGGCTGTACGTGTGACAAGC
GAGGATCCTGATGACGGGTTTAAACCAACCAGCGGTGAAATACAGGTAATGTGATATATCTGTG
GAATGCAAAATTTTAAAGTCTATGATAACTGTGCGGGGGTGACACTTGTATGAACTTGCAACAG
GAATTGAGTTTTAAGAGCAAGCCAAATATGTGGTCGTACTTCTCTGTCAAGGTAGTTTATATCT
ACGAGATGCTTTGCTATATTACGTGTTTTGGTATGTCTTAAGTTTTCTGACTTTACTTTTATTT
ATATAGTCTGGTGGAGGCATCCACGAGTTCTCAGATTCACAGTTTGGTAAGTTAAATGAAAAAT
TTGGGATGCTAGGACAGTTCTTTTCTTGAGCGTATACAAATTGAAACGTCCTTTAATCTTTTTT
TCAGGACATGTTTTTGCATTTGGGGAATCCAGATCCGTGGCGATAGCAAATATGGTTCTTGCGC
TGAAAGAAATTCAAATCCGTGGAGATATTAGGACTAACGTTGACTACACGATCGACCTTCTACA
TGTATGTTTCCTTCTTCCTACATACAAAAGTTATACTGTGACTGTAATGTACCCTGACAAGATC
ATTTCGTTGATAAACCAGGCTTCTGATTACCGGGAAAACAAAATACACACTGGTTGGTTGGACA
GTAGGATTGCTATGCGGGTCAGAGCAGAGAGACCTCCATGGTATCTCTCTGTAGTCGGTGGGGC
TCTTTATGTAAGACCCTCTTTCTCAGAGCTCTGTTTGTCTTGAAAAGTTTTTATCTGGTGACTA
GATGTTGTCTTTGTCCAGAAAGCATCTACGACCAGTTCTGCTGTAGTTTCGGATTACGTTGGCT
ATCTAGAAAAGGGGCAAATTCCCCCAAAGGTACTCCAATATCAGCGCTCTCTTTTGTCTTTCTT
GTAATGTTCTTGTAGCTTACTTTTCTCTCTCTTAACTTGCAGCATATATCTCTTGTGCATTCTC
AAGTGTCACTGAATATTGAAGGAAGTAAATATACGGTATGCGTCTCCTGTCAAAAGTTTACTTC
TCTTCATTTTTTTTATTTTTTTTTCCCTTTACCATATTATCTCTGCACTGAAGATGTTGTACCC
GAGGCTCACTAATTGAACATACCTGTGTCTAGATTGATGTAGTCCGGGGTGGATCAGGAACCTA
CAGGCTAAGAATGAGCAACTCAGAAGTTGTAGCAGAAATACACACTCTACGTGATGGAGGTCTA
TTGATGCAGGCAAGTTTTATAACTTTATTCTATACTACAAGACAGAGACATACATGTGTCATGC
ATAGTAACTTCCTTTTAAGAAGCTCACTTCCATTTTTGGTTCACTGTCATTGCAGTTGGATGGT
AAAAGCCATGTGATATATGCAAAGGAAGAAGCGACAGGAACCCGTCTTCTCATTGACGGAAGAA
CTTGCTTACTACAGGTTTCAACTGAACGGTTTTTCTATTTTACCGTAATACTTCACGTTTCTCT
GAAGTCATTTTTAGCAATAAGTTATCTGTCAATTTTGGCTTGTTCAGAATGATCATGATCCTTC
GAAGTTGATGGCTGAGACACCATGCAAGTTGCTAAGGTACCTGGTTTCAGACAACAGCAGTATT
GATACTGATACGCCGTATGCAGAAGTTGAAGTCATGAAGATGTGCATGCCACTTATTTCACCTG
CGTCAGGAGTTATCCATTTCAAGTTGTCTGAAGGACAAGCCATGCAGGTGAAGAACCAATTCAT
TGCTAAAGAAAATTTGTTTCTTACAGTTTTGTAGAAATTGATTAACCCATCCGATATTTTCTTG
ACAGGCTGGTGAACTCATAGCCAAGCTTGATCTTGATGATCCTTCTGCTGTAAGAAAGGCCAAA
CCCTTCCGTGGAAGTTTCCCACGATTAGGGCTTCCAACGGCAATCTCCGGTAAAGTTCATCAGA
GATGTGCTGCAACTTTAAATGCTGCACGTATGATTCTTGCTGGCTATGATCATAAAGTAGATGA
GGTAAACGCTATTTGGTTTTCCTATGTGATTCAACTTTTCTATTAAATAATTTGATTCTGAGAT
TGCTCATATGTTTTGCAGGTTCTTCAAGACTTGCTTAATTGCCTTGATAGCCCTGAACTCCCAT
TTCTTCAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAGATCTCAGGAACAT
GGTAAACACTTAGATACTATTCGTAATCCGTTTTCCTTTACTGTGATCTTGTTTTGAGTTTCTA
GTCTTTTAATGCTTTTTGTTTATAATTCTTTATCAGCTAGAATTGAAATACAAGGAATTTGAGA
TTATCTCCAAAACCTCCCTGACCCCAGATTTCCCTGCCAAACTCTTAAAAGGCATCCTTGAG
						
					

			
		

Sequences
Splice junction sequence	TCTTTATCAGCTAGAATTGAAATACAAGGAATTTGAGATTATCTCCAAAACCTCCCTGACCCCA GATTTCCCTGCCAAACTCTTAAAAGGCATCCTTGAGatcatagaggaaggtccaatcaccgtag ctccgcaagaaaccatcaagaaacttgaacaagcagctagaaggttagctaagagtgttaacta tgttggag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATCATAGAGGAAGGTCCAATCACCGTAGCTCCGCAAGAAACCATCAAGAAACTTGAACAAGCAG CTAGAAGGTTAGCTAAGAGTGTTAACTATGTTGGAGCTGCTACTGTTGAGTATCTCTATAGTAT GGACACTGGGGAGTACTACTTCTTAGAGCTTAACCCTCGCTTACAGGTTTCTTTCCATACACAC CATAGCTACCTTTCCTTTTCGAATGAAAGATTTTGGTCTTGAAAATCGAATGTTCGATGTCAGG TTGAGCATCCTGTAACCGAGTGGATCGCCGAGGTTAATCTTCCTGCTGCTCAAGTTGCTGTTGG GATGGGAATTCCTCTCTGGCAAATCCCTGGTATGGTCTTGCATCCTGGGGCAGTGGTTTTTTTT TTCTAGGCTATATGCTTATGTAATGTACTGTTTCGCTTTTGTTTGATAGAGATAAGACGGTTTT ACGGTATGGAACATGGTGGAGGATATGATTCTTGGAGGAAAACATCGGTTGTAGCCTCTCCTTT TGATTTTGATGAAGCTGAATCTTTAAGGCCAAAAGGTCATTGTGTGGCTGTACGTGTGACAAGC GAGGATCCTGATGACGGGTTTAAACCAACCAGCGGTGAAATACAGGTAATGTGATATATCTGTG GAATGCAAAATTTTAAAGTCTATGATAACTGTGCGGGGGTGACACTTGTATGAACTTGCAACAG GAATTGAGTTTTAAGAGCAAGCCAAATATGTGGTCGTACTTCTCTGTCAAGGTAGTTTATATCT ACGAGATGCTTTGCTATATTACGTGTTTTGGTATGTCTTAAGTTTTCTGACTTTACTTTTATTT ATATAGTCTGGTGGAGGCATCCACGAGTTCTCAGATTCACAGTTTGGTAAGTTAAATGAAAAAT TTGGGATGCTAGGACAGTTCTTTTCTTGAGCGTATACAAATTGAAACGTCCTTTAATCTTTTTT TCAGGACATGTTTTTGCATTTGGGGAATCCAGATCCGTGGCGATAGCAAATATGGTTCTTGCGC TGAAAGAAATTCAAATCCGTGGAGATATTAGGACTAACGTTGACTACACGATCGACCTTCTACA TGTATGTTTCCTTCTTCCTACATACAAAAGTTATACTGTGACTGTAATGTACCCTGACAAGATC ATTTCGTTGATAAACCAGGCTTCTGATTACCGGGAAAACAAAATACACACTGGTTGGTTGGACA GTAGGATTGCTATGCGGGTCAGAGCAGAGAGACCTCCATGGTATCTCTCTGTAGTCGGTGGGGC TCTTTATGTAAGACCCTCTTTCTCAGAGCTCTGTTTGTCTTGAAAAGTTTTTATCTGGTGACTA GATGTTGTCTTTGTCCAGAAAGCATCTACGACCAGTTCTGCTGTAGTTTCGGATTACGTTGGCT ATCTAGAAAAGGGGCAAATTCCCCCAAAGGTACTCCAATATCAGCGCTCTCTTTTGTCTTTCTT GTAATGTTCTTGTAGCTTACTTTTCTCTCTCTTAACTTGCAGCATATATCTCTTGTGCATTCTC AAGTGTCACTGAATATTGAAGGAAGTAAATATACGGTATGCGTCTCCTGTCAAAAGTTTACTTC TCTTCATTTTTTTTATTTTTTTTTCCCTTTACCATATTATCTCTGCACTGAAGATGTTGTACCC GAGGCTCACTAATTGAACATACCTGTGTCTAGATTGATGTAGTCCGGGGTGGATCAGGAACCTA CAGGCTAAGAATGAGCAACTCAGAAGTTGTAGCAGAAATACACACTCTACGTGATGGAGGTCTA TTGATGCAGGCAAGTTTTATAACTTTATTCTATACTACAAGACAGAGACATACATGTGTCATGC ATAGTAACTTCCTTTTAAGAAGCTCACTTCCATTTTTGGTTCACTGTCATTGCAGTTGGATGGT AAAAGCCATGTGATATATGCAAAGGAAGAAGCGACAGGAACCCGTCTTCTCATTGACGGAAGAA CTTGCTTACTACAGGTTTCAACTGAACGGTTTTTCTATTTTACCGTAATACTTCACGTTTCTCT GAAGTCATTTTTAGCAATAAGTTATCTGTCAATTTTGGCTTGTTCAGAATGATCATGATCCTTC GAAGTTGATGGCTGAGACACCATGCAAGTTGCTAAGGTACCTGGTTTCAGACAACAGCAGTATT GATACTGATACGCCGTATGCAGAAGTTGAAGTCATGAAGATGTGCATGCCACTTATTTCACCTG CGTCAGGAGTTATCCATTTCAAGTTGTCTGAAGGACAAGCCATGCAGGTGAAGAACCAATTCAT TGCTAAAGAAAATTTGTTTCTTACAGTTTTGTAGAAATTGATTAACCCATCCGATATTTTCTTG ACAGGCTGGTGAACTCATAGCCAAGCTTGATCTTGATGATCCTTCTGCTGTAAGAAAGGCCAAA CCCTTCCGTGGAAGTTTCCCACGATTAGGGCTTCCAACGGCAATCTCCGGTAAAGTTCATCAGA GATGTGCTGCAACTTTAAATGCTGCACGTATGATTCTTGCTGGCTATGATCATAAAGTAGATGA GGTAAACGCTATTTGGTTTTCCTATGTGATTCAACTTTTCTATTAAATAATTTGATTCTGAGAT TGCTCATATGTTTTGCAGGTTCTTCAAGACTTGCTTAATTGCCTTGATAGCCCTGAACTCCCAT TTCTTCAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAGATCTCAGGAACAT GGTAAACACTTAGATACTATTCGTAATCCGTTTTCCTTTACTGTGATCTTGTTTTGAGTTTCTA GTCTTTTAATGCTTTTTGTTTATAATTCTTTATCAGCTAGAATTGAAATACAAGGAATTTGAGA TTATCTCCAAAACCTCCCTGACCCCAGATTTCCCTGCCAAACTCTTAAAAGGCATCCTTGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.193232615

Conservation Information
Conserved circRNAs	NA
PMCS	0.193232615

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							13550414-13553226(+)
						
					

						Potential amino acid sequence
						
							MDTGEYYFLELNPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYDSW
RKTSVVASPFDFDEAESLRPKGHCVAVRVTSEDPDDGFKPTSGEIQELSFKSKPNMWSYFSVKS
GGGIHEFSDSQFGHVFAFGESRSVAIANMVLALKEIQIRGDIRTNVDYTIDLLHASDYRENKIH
TGWLDSRIAMRVRAERPPWYLSVVGGALYKASTTSSAVVSDYVGYLEKGQIPPKHISLVHSQVS
LNIEGSKYTIDVVRGGSGTYRLRMSNSEVVAEIHTLRDGGLLMQLDGKSHVIYAKEEATGTRLL
IDGRTCLLQNDHDPSKLMAETPCKLLRYLVSDNSSIDTDTPYAEVEVMKMCMPLISPASGVIHF
KLSEGQAMQAGELIAKLDLDDPSAVRKAKPFRGSFPRLGLPTAISGKVHQRCAATLNAARMILA
GYDHKVDEVLQDLLNCLDSPELPFLQWQECFAVLATRLPKDLRNMLELKYKEFEIISKTSLTPD
FPAKLLKGILEIIEEGPITVAPQETIKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLEL
NPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYDSWRKTSVVASPFD
FDEAESLRPKGHCVAVRVTSEDPDDGFKPTSGEIQELSFKSKPNMWSYFSVKSGGGIHEFSDSQ
FGHVFAFGESRSVAIANMVLALKEIQIRGDIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR
VRAERPPWYLSVVGGALYKASTTSSAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTID
VVRGGSGTYRLRMSNSEVVAEIHTLRDGGLLMQLDGKSHVIYAKEEATGTRLLIDGRTCLLQND
HDPSKLMAETPCKLLRYLVSDNSSIDTDTPYAEVEVMKMCMPLISPASGVIHFKLSEGQAMQAG
ELIAKLDLDDPSAVRKAKPFRGSFPRLGLPTAISGKVHQRCAATLNAARMILAGYDHKVDEVLQ
DLLNCLDSPELPFLQWQECFAVLATRLPKDLRNMLELKYKEFEIISKTSLTPDFPAKLLKGILE
IIEEGPITVAPQETIKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEHPVT
EWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYDSWRKTSVVASPFDFDEAESLRPKG
HCVAVRVTSEDPDDGFKPTSGEIQELSFKSKPNMWSYFSVKSGGGIHEFSDSQFGHVFAFGESR
SVAIANMVLALKEIQIRGDIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLS
VVGGALYKASTTSSAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTIDVVRGGSGTYRL
RMSNSEVVAEIHTLRDGGLLMQLDGKSHVIYAKEEATGTRLLIDGRTCLLQNDHDPSKLMAETP
CKLLRYLVSDNSSIDTDTPYAEVEVMKMCMPLISPASGVIHFKLSEGQAMQAGELIAKLDLDDP
SAVRKAKPFRGSFPRLGLPTAISGKVHQRCAATLNAARMILAGYDHKVDEVLQDLLNCLDSPEL
PFLQWQECFAVLATRLPKDLRNMLELKYKEFEIISKTSLTPDFPAKLLKGILEIIEEGPITVAP
QETIKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEHPVTEWIAEVNLPAA
QVAVGMGIPLWQIPEIRRFYGMEHGGGYDSWRKTSVVASPFDFDEAESLRPKGHCVAVRVTSED
PDDGFKPTSGEIQELSFKSKPNMWSYFSVKSGGGIHEFSDSQFGHVFAFGESRSVAIANMVLAL
KEIQIRGDIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKAST
TSSAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTIDVVRGGSGTYRLRMSNSEVVAEI
HTLRDGGLLMQLDGKSHVIYAKEEATGTRLLIDGRTCLLQNDHDPSKLMAETPCKLLRYLVSDN
SSIDTDTPYAEVEVMKMCMPLISPASGVIHFKLSEGQAMQAGELIAKLDLDDPSAVRKAKPFRG
SFPRLGLPTAISGKVHQRCAATLNAARMILAGYDHKVDEVLQDLLNCLDSPELPFLQWQECFAV
LATRLPKDLRNMLELKYKEFEIISKTSLTPDFPAKLLKGILE(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	13550414-13553226(+)
Potential amino acid sequence	MDTGEYYFLELNPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYDSW RKTSVVASPFDFDEAESLRPKGHCVAVRVTSEDPDDGFKPTSGEIQELSFKSKPNMWSYFSVKS GGGIHEFSDSQFGHVFAFGESRSVAIANMVLALKEIQIRGDIRTNVDYTIDLLHASDYRENKIH TGWLDSRIAMRVRAERPPWYLSVVGGALYKASTTSSAVVSDYVGYLEKGQIPPKHISLVHSQVS LNIEGSKYTIDVVRGGSGTYRLRMSNSEVVAEIHTLRDGGLLMQLDGKSHVIYAKEEATGTRLL IDGRTCLLQNDHDPSKLMAETPCKLLRYLVSDNSSIDTDTPYAEVEVMKMCMPLISPASGVIHF KLSEGQAMQAGELIAKLDLDDPSAVRKAKPFRGSFPRLGLPTAISGKVHQRCAATLNAARMILA GYDHKVDEVLQDLLNCLDSPELPFLQWQECFAVLATRLPKDLRNMLELKYKEFEIISKTSLTPD FPAKLLKGILEIIEEGPITVAPQETIKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLEL NPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYDSWRKTSVVASPFD FDEAESLRPKGHCVAVRVTSEDPDDGFKPTSGEIQELSFKSKPNMWSYFSVKSGGGIHEFSDSQ FGHVFAFGESRSVAIANMVLALKEIQIRGDIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR VRAERPPWYLSVVGGALYKASTTSSAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTID VVRGGSGTYRLRMSNSEVVAEIHTLRDGGLLMQLDGKSHVIYAKEEATGTRLLIDGRTCLLQND HDPSKLMAETPCKLLRYLVSDNSSIDTDTPYAEVEVMKMCMPLISPASGVIHFKLSEGQAMQAG ELIAKLDLDDPSAVRKAKPFRGSFPRLGLPTAISGKVHQRCAATLNAARMILAGYDHKVDEVLQ DLLNCLDSPELPFLQWQECFAVLATRLPKDLRNMLELKYKEFEIISKTSLTPDFPAKLLKGILE IIEEGPITVAPQETIKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEHPVT EWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYDSWRKTSVVASPFDFDEAESLRPKG HCVAVRVTSEDPDDGFKPTSGEIQELSFKSKPNMWSYFSVKSGGGIHEFSDSQFGHVFAFGESR SVAIANMVLALKEIQIRGDIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLS VVGGALYKASTTSSAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTIDVVRGGSGTYRL RMSNSEVVAEIHTLRDGGLLMQLDGKSHVIYAKEEATGTRLLIDGRTCLLQNDHDPSKLMAETP CKLLRYLVSDNSSIDTDTPYAEVEVMKMCMPLISPASGVIHFKLSEGQAMQAGELIAKLDLDDP SAVRKAKPFRGSFPRLGLPTAISGKVHQRCAATLNAARMILAGYDHKVDEVLQDLLNCLDSPEL PFLQWQECFAVLATRLPKDLRNMLELKYKEFEIISKTSLTPDFPAKLLKGILEIIEEGPITVAP QETIKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEHPVTEWIAEVNLPAA QVAVGMGIPLWQIPEIRRFYGMEHGGGYDSWRKTSVVASPFDFDEAESLRPKGHCVAVRVTSED PDDGFKPTSGEIQELSFKSKPNMWSYFSVKSGGGIHEFSDSQFGHVFAFGESRSVAIANMVLAL KEIQIRGDIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKAST TSSAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTIDVVRGGSGTYRLRMSNSEVVAEI HTLRDGGLLMQLDGKSHVIYAKEEATGTRLLIDGRTCLLQNDHDPSKLMAETPCKLLRYLVSDN SSIDTDTPYAEVEVMKMCMPLISPASGVIHFKLSEGQAMQAGELIAKLDLDDPSAVRKAKPFRG SFPRLGLPTAISGKVHQRCAATLNAARMILAGYDHKVDEVLQDLLNCLDSPELPFLQWQECFAV LATRLPKDLRNMLELKYKEFEIISKTSLTPDFPAKLLKGILE(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT1G36180_circ_g.1

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