Plant Circular RNA Database

Detail information of AT5G08710_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT5G08710_circ_g.1
					
						ID in PlantcircBase
						ath_circ_037165
					
						Alias
						5:2834921-2837177
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 2834921-2837177  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G08710						
					
						Parent gene annotation
						
							RUG1
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G08710_circ_g.2 AT5G08710_circ_g.3 AT5G08710_circ_g.4 AT5G08710_circ_g.5 AT5G08710_circ_g.6 AT5G08710_circ_g.7 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G08710.1:13
AT5G08710.2:12

General Information
CircRNA Name	AT5G08710_circ_g.1
ID in PlantcircBase	ath_circ_037165
Alias	5:2834921-2837177
Organism	Arabidpsis thaliana
Position	chr5: 2834921-2837177 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G08710
Parent gene annotation	RUG1
Parent gene strand	-
Alternative splicing	AT5G08710_circ_g.2 AT5G08710_circ_g.3 AT5G08710_circ_g.4 AT5G08710_circ_g.5 AT5G08710_circ_g.6 AT5G08710_circ_g.7
Support reads	2
Tissues	root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G08710.1:13 AT5G08710.2:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAACCTACCAATTAGTAACATACCATAGCATGACTTTTAACATCTGATACGCCAAGTTGACCAC
AATCATTAAGACCCGTTGCAAAGACTCTCCTCGTTTattctttcccaagtccaccattgctggt
cttgcatagtctacatcactaccatggccctacatattaagcataccatatttattctcttcga
cacttgaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATTCTTTCCCAAGTCCACCATTGCTGGTCTTGCATAGTCTACATCACTACCATGGCCCTACATA
TTAAGCATACCATATTTATTCTCTTCGACACTTGAAAATGTTGTTTCAGAGATTTGATCAATAA
GATAAGATGATGAAACAAACCAATTGTCCACCAGAGGAATGTCCATCAACAGAGAATGTGCCGT
GAGATCCTCCCCAGCCCCAGGTGAAGACATTGTTATCTGCAAACAAGTTTCAGAAATTGAGTTG
AATTAACTTATACAATGAGAGAGGAAACAAATATGTTTTACTCAAAAGAGATGCTACCTGAAAT
AGCTGCAGTGTGCTTCCACCCACAAGATACCTGAGATACAGTAGACTCCAAGAAAGGACCTTCA
ACTCTCACAGGGGAGTGTGAGACATACGTTGAACTGAATTTTTTGAAATAAGAGTATAGGTACA
GTTCAAGAACCTTGTTTTCATCTTATGGGGAAACATTCTATTTTTTCGGGGTATGTAACTTACT
CTGTTCCAAGGCACCCATTTTCGTTTGAGCCCCAGGTGTAAAGCTCCCCACCTCCTTCCAAAAA
CGAAGGAAACATCAAACGATGAGTTGTTATCGACCATCTTACAAACACAATATGTTCATAAATT
TAGCAGAAACTAAAGAGCAGTTTTGGGCCTCTATAAAGAATAACAAAAAGAAATTTGAGCAGGA
CAGGCATTTGCAGTATACAAGCAAACTCAATATCAAAGAAAGAACGATATAATAAGAGAGTATT
ACTTGTAACTACACATGTGTGGTAGCCACCACATGCAACTTCTTCTGCATATGGTACTTCACTG
ATAATCGATGGTGTTGTGGCATTTCTTACTCCTCCAAAGCCCTGTATTTTCCCATCAGATAGCT
TCACATATATGACCACAGAAATCAAAGAAAAAGACATTTTCTTACCATCTTGTTTATAGATTTC
TCTCCGAACATGAAAGCAGAGCCATTCTCTGCATTTGCAAACAAACCTCATAAAGTTCGGTAAA
TGGCACAACATTCATACTTTTAAGAAAGTAAATCAATACCATCAGTGCATGCTGAATGCAGCAG
ACCAGCAGCAACATTTGTGACCTAGTGCTCGACAGAAAGAATGGAAAAACATAAGCATGAAAGT
CTAAAGATTAAAACCACCACTAGGTAACTAGAAACTCTTCATCCAAGGTGGATATTCTTCACCA
CTAGATTACCTTGATCCCCTCAAGTTCCTTGATAAGCCTTGGAGTAAACTCACTGCAATCAGGG
GGATACTTTACAGTGCAATACAAGAAAATTATGAAGGAATCATGATAAAGTAAAGGAGGAAATG
GGAAAATTCTTGTGAGCAAAAAATGCATGAGAAAGAGACAAAACGATATTGAAATTAAGTAAAA
CAAACCTGTTACTTCTTAAGATGCCAAAAAGACTGGACTGGTGACCGTGGCCAAGTCTTCCAGA
GCCCCCTCCTCCCCAACTCAGGACTTCACCTCCATCTGCTCAAGAAAAAGATACCCTCAGATTT
CTCCGAGTACTTAAAAGACAAAAAGGTGTTTTCTTCTGTATCCAGATAAGAATCGAGGATCCAA
ACCAGTAACAGCAACTGAATGCTCTGAACCCAAAGCCACGGATTGTATGGTGATGCCATGCAGA
GCTTCCACTTTAGTTGGTACACGTACCACTCTTGCAGCCTCTTCATAAGAAAAAAAATGTATAA
AGGAAAAGAACATGTAAATAGAGCAAGAAACTTGATGTATTAGGACATGCATAGCAGTGCATAA
ATGTTTGAATGGAAAGTGATGTACTTTTTCCCAGTCCAAGCTGTCCACTTGAGTTCTTTCCCCA
CATGTAGAGTTCTCCATCAACTAATGAAATGAAAGAGAGCAAATATGAGTGCCATACTATTTCA
ACAAGATCATGTTTAAGGTTCAGGTTATGACAATTCAATGAAGAACATTGTGGTTACTGGTTGT
TTACCTGTAATAGCAGCGGAGTGATAATAACCAGCTGAAATGTGCAGAATATCCTTATCTAGTC
CAGAAACTTCAAGCGGATCCTAAAATATCAAATTTATAATTGAATTATCTGAGATAAAGACATG
TGAAGGAAAAGAAAAGAAAAACCAGCAGCTCTATAGTGTTTTGACCAACCTACCAATTAGTAAC
ATACCATAGCATGACTTTTAACATCTGATACGCCAAGTTGACCACAATCATTAAGACCCGTTGC
AAAGACTCTCCTCGTTT
						
					

			
		

Sequences
Splice junction sequence	CAACCTACCAATTAGTAACATACCATAGCATGACTTTTAACATCTGATACGCCAAGTTGACCAC AATCATTAAGACCCGTTGCAAAGACTCTCCTCGTTTattctttcccaagtccaccattgctggt cttgcatagtctacatcactaccatggccctacatattaagcataccatatttattctcttcga cacttgaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATTCTTTCCCAAGTCCACCATTGCTGGTCTTGCATAGTCTACATCACTACCATGGCCCTACATA TTAAGCATACCATATTTATTCTCTTCGACACTTGAAAATGTTGTTTCAGAGATTTGATCAATAA GATAAGATGATGAAACAAACCAATTGTCCACCAGAGGAATGTCCATCAACAGAGAATGTGCCGT GAGATCCTCCCCAGCCCCAGGTGAAGACATTGTTATCTGCAAACAAGTTTCAGAAATTGAGTTG AATTAACTTATACAATGAGAGAGGAAACAAATATGTTTTACTCAAAAGAGATGCTACCTGAAAT AGCTGCAGTGTGCTTCCACCCACAAGATACCTGAGATACAGTAGACTCCAAGAAAGGACCTTCA ACTCTCACAGGGGAGTGTGAGACATACGTTGAACTGAATTTTTTGAAATAAGAGTATAGGTACA GTTCAAGAACCTTGTTTTCATCTTATGGGGAAACATTCTATTTTTTCGGGGTATGTAACTTACT CTGTTCCAAGGCACCCATTTTCGTTTGAGCCCCAGGTGTAAAGCTCCCCACCTCCTTCCAAAAA CGAAGGAAACATCAAACGATGAGTTGTTATCGACCATCTTACAAACACAATATGTTCATAAATT TAGCAGAAACTAAAGAGCAGTTTTGGGCCTCTATAAAGAATAACAAAAAGAAATTTGAGCAGGA CAGGCATTTGCAGTATACAAGCAAACTCAATATCAAAGAAAGAACGATATAATAAGAGAGTATT ACTTGTAACTACACATGTGTGGTAGCCACCACATGCAACTTCTTCTGCATATGGTACTTCACTG ATAATCGATGGTGTTGTGGCATTTCTTACTCCTCCAAAGCCCTGTATTTTCCCATCAGATAGCT TCACATATATGACCACAGAAATCAAAGAAAAAGACATTTTCTTACCATCTTGTTTATAGATTTC TCTCCGAACATGAAAGCAGAGCCATTCTCTGCATTTGCAAACAAACCTCATAAAGTTCGGTAAA TGGCACAACATTCATACTTTTAAGAAAGTAAATCAATACCATCAGTGCATGCTGAATGCAGCAG ACCAGCAGCAACATTTGTGACCTAGTGCTCGACAGAAAGAATGGAAAAACATAAGCATGAAAGT CTAAAGATTAAAACCACCACTAGGTAACTAGAAACTCTTCATCCAAGGTGGATATTCTTCACCA CTAGATTACCTTGATCCCCTCAAGTTCCTTGATAAGCCTTGGAGTAAACTCACTGCAATCAGGG GGATACTTTACAGTGCAATACAAGAAAATTATGAAGGAATCATGATAAAGTAAAGGAGGAAATG GGAAAATTCTTGTGAGCAAAAAATGCATGAGAAAGAGACAAAACGATATTGAAATTAAGTAAAA CAAACCTGTTACTTCTTAAGATGCCAAAAAGACTGGACTGGTGACCGTGGCCAAGTCTTCCAGA GCCCCCTCCTCCCCAACTCAGGACTTCACCTCCATCTGCTCAAGAAAAAGATACCCTCAGATTT CTCCGAGTACTTAAAAGACAAAAAGGTGTTTTCTTCTGTATCCAGATAAGAATCGAGGATCCAA ACCAGTAACAGCAACTGAATGCTCTGAACCCAAAGCCACGGATTGTATGGTGATGCCATGCAGA GCTTCCACTTTAGTTGGTACACGTACCACTCTTGCAGCCTCTTCATAAGAAAAAAAATGTATAA AGGAAAAGAACATGTAAATAGAGCAAGAAACTTGATGTATTAGGACATGCATAGCAGTGCATAA ATGTTTGAATGGAAAGTGATGTACTTTTTCCCAGTCCAAGCTGTCCACTTGAGTTCTTTCCCCA CATGTAGAGTTCTCCATCAACTAATGAAATGAAAGAGAGCAAATATGAGTGCCATACTATTTCA ACAAGATCATGTTTAAGGTTCAGGTTATGACAATTCAATGAAGAACATTGTGGTTACTGGTTGT TTACCTGTAATAGCAGCGGAGTGATAATAACCAGCTGAAATGTGCAGAATATCCTTATCTAGTC CAGAAACTTCAAGCGGATCCTAAAATATCAAATTTATAATTGAATTATCTGAGATAAAGACATG TGAAGGAAAAGAAAAGAAAAACCAGCAGCTCTATAGTGTTTTGACCAACCTACCAATTAGTAAC ATACCATAGCATGACTTTTAACATCTGATACGCCAAGTTGACCACAATCATTAAGACCCGTTGC AAAGACTCTCCTCGTTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.130946821

Conservation Information
Conserved circRNAs	NA
PMCS	0.130946821

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G08710_circ_g.1

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