Plant Circular RNA Database

Detail information of Os05g0557600_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os05g0557600_circ_g.2
					
						ID in PlantcircBase
						osa_circ_028878
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 27735130-27736627  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0557600						
					
						Parent gene annotation
						
							Ubiquitin-conjugating enzyme/RWD-like domain containing protein.
 (Os05t0557600-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0557600-01:5

General Information
CircRNA Name	Os05g0557600_circ_g.2
ID in PlantcircBase	osa_circ_028878
Alias	NA
Organism	Oryza sativa
Position	chr5: 27735130-27736627 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0557600
Parent gene annotation	Ubiquitin-conjugating enzyme/RWD-like domain containing protein. (Os05t0557600-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0557600-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAGCTTGCTTATTCTTATCAACTGATGATTTTTCACCAATAATCACAACTCCATCAGGATCATC
ATCAGCATCCAGTTCAATTACTTCATGAGGAACAACctttggtggatttcgcagagaatatagc
attgtcctgcaggatagcaggaaagtatcttcattataagttaatgaactcttctcgccatgag
gtgtatta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1098
Transcript exons: 27735130-27735441,27735527-27735666,27735826-27735889,27
735961-27736407,27736493-27736627
CTTTGGTGGATTTCGCAGAGAATATAGCATTGTCCTGCAGGATAGCAGGAAAGTATCTTCATTA
TAAGTTAATGAACTCTTCTCGCCATGAGGTGTATTAGCATGCATGGCATATCCAGGCTCATTGA
AATAAGGTTTGGCATTCAACACCAAAGCCTGAACTGAGACCAGGACTTGTAGCATTGTTGAGTT
TGAAGGACTCCACCTCTCACATCCACTACCAGACCAGGTGTTCAACAGGCTAAGGCACACCTTC
CCGCAAGCATACAAGTTTGGATTAAGCCGCAACCCACCAGACCGATAGTTCACCAGTGGAGGTA
CACTCGGATAATGAGGAGGGAAGTAAATGTCAAAGAAGAAGAGACCATCATGATAGGGAGTGCC
TGCTGGTCCCGTAATAACAGCTCTAAGCAGGTCCATTCTATCCTCATATGCCCTCACGAATATG
GTATCTGGTAAATCTTTTTCTAGAACTTTCCACTCGTGCTGAATACGCTTTGCCCATTCTTTTG
AAGGCTTTTTCACTACCTGAACCTTTCTTAAATCTGGCTTCGAATAATAATGATCACTGTGATC
ATCAACAGTATCGAATTGCTTAAATGCACTGTATTTTTCATCAATTTTATCATCCATCATGTTC
ACAGGTTTGGTCTTATTTGCCATCTCTGCCGCAGTCGTCTGCAACCATGGTAAAGGAGCCTCCA
CACCAGGTGGGATATCCAAACCATCAAACTTGGAAGCCAAAGTGAAGTTATATTCACTTTCATA
AAGTGTACTATCATAATCGTAATCATCATACTCATCTTCATCATAACCATAATCTTCTTCAAAT
GCCTCATAAGCATAGTCATCAATGTTGTTGTAAAATGGGTTCTCTTGAAATATTTTCAGGCCAC
CAAGTAATATATCAGGATTTTTTGATGGGTAGGAACTTGGGCCAGCAATTTCACCAGCCAAACT
ACTCTTTGCATGCTTTAGCCAGTCTATAGGATATCCAACAGCTTGCTTATTCTTATCAACTGAT
GATTTTTCACCAATAATCACAACTCCATCAGGATCATCATCAGCATCCAGTTCAATTACTTCAT
GAGGAACAAC
						
					

						Genomic sequence
						
							CTTTGGTGGATTTCGCAGAGAATATAGCATTGTCCTGCAGGATAGCAGGAAAGTATCTTCATTA
TAAGTTAATGAACTCTTCTCGCCATGAGGTGTATTAGCATGCATGGCATATCCAGGCTCATTGA
AATAAGGTTTGGCATTCAACACCAAAGCCTGAACTGAGACCAGGACTTGTAGCATTGTTGAGTT
TGAAGGACTCCACCTCTCACATCCACTACCAGACCAGGTGTTCAACAGGCTAAGGCACACCTTC
CCGCAAGCATACAAGTTTGGATTAAGCCGCAACCCACCAGACCGATAGTTCACCAGCTGCATAG
ATTACTAACTATTGTAAGATACTTAAAAATGGAGTGAAACATCATCGATGCTGGTTAAGTCAAA
AAAAAAATCTTACTGGAGGTACACTCGGATAATGAGGAGGGAAGTAAATGTCAAAGAAGAAGAG
ACCATCATGATAGGGAGTGCCTGCTGGTCCCGTAATAACAGCTCTAAGCAGGTCCATTCTATCC
TCATATGCCCTCACGAATATGGTATCTGTAAATATAGGACAAAAATCCAAAGTAAATAATCATA
AAAGGACCTCATGAATGTAGTACTTATCAACAGCATGATCGCATCATGCACGACACTTAGCATA
AACACTGTACCATTAGCTGTTCATAAAAAAAAGAGCATATGAAGCAACAAAACTACCTGGTAAA
TCTTTTTCTAGAACTTTCCACTCGTGCTGAATACGCTTTGCCCATTCTTTTGAAGGCTGTCAAT
GGGAAAACTTAGTATCGAACTAACAAGAAAAGGAATATACAGAGGGTACAAAAAAAAGGTTACC
TTTTTCACTACCTGAACCTTTCTTAAATCTGGCTTCGAATAATAATGATCACTGTGATCATCAA
CAGTATCGAATTGCTTAAATGCACTGTATTTTTCATCAATTTTATCATCCATCATGTTCACAGG
TTTGGTCTTATTTGCCATCTCTGCCGCAGTCGTCTGCAACCATGGTAAAGGAGCCTCCACACCA
GGTGGGATATCCAAACCATCAAACTTGGAAGCCAAAGTGAAGTTATATTCACTTTCATAAAGTG
TACTATCATAATCGTAATCATCATACTCATCTTCATCATAACCATAATCTTCTTCAAATGCCTC
ATAAGCATAGTCATCAATGTTGTTGTAAAATGGGTTCTCTTGAAATATTTTCAGGCCACCAAGT
AATATATCAGGATTTTTTGATGGGTAGGAACTTGGGCCAGCAATTTCACCAGCCAAACTACTCT
GGAGTTGTTCCCACAGAAAATAAGTCAAACTGACGTGGTATAGGAAAAAGGAAAATGAAAATAG
AAGACATGAGAAAACTTACCTTTGCATGCTTTAGCCAGTCTATAGGATATCCAACAGCTTGCTT
ATTCTTATCAACTGATGATTTTTCACCAATAATCACAACTCCATCAGGATCATCATCAGCATCC
AGTTCAATTACTTCATGAGGAACAAC
						
					

			
		

Sequences
Splice junction sequence	CAGCTTGCTTATTCTTATCAACTGATGATTTTTCACCAATAATCACAACTCCATCAGGATCATC ATCAGCATCCAGTTCAATTACTTCATGAGGAACAACctttggtggatttcgcagagaatatagc attgtcctgcaggatagcaggaaagtatcttcattataagttaatgaactcttctcgccatgag gtgtatta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1098 Transcript exons: 27735130-27735441,27735527-27735666,27735826-27735889,27 735961-27736407,27736493-27736627 CTTTGGTGGATTTCGCAGAGAATATAGCATTGTCCTGCAGGATAGCAGGAAAGTATCTTCATTA TAAGTTAATGAACTCTTCTCGCCATGAGGTGTATTAGCATGCATGGCATATCCAGGCTCATTGA AATAAGGTTTGGCATTCAACACCAAAGCCTGAACTGAGACCAGGACTTGTAGCATTGTTGAGTT TGAAGGACTCCACCTCTCACATCCACTACCAGACCAGGTGTTCAACAGGCTAAGGCACACCTTC CCGCAAGCATACAAGTTTGGATTAAGCCGCAACCCACCAGACCGATAGTTCACCAGTGGAGGTA CACTCGGATAATGAGGAGGGAAGTAAATGTCAAAGAAGAAGAGACCATCATGATAGGGAGTGCC TGCTGGTCCCGTAATAACAGCTCTAAGCAGGTCCATTCTATCCTCATATGCCCTCACGAATATG GTATCTGGTAAATCTTTTTCTAGAACTTTCCACTCGTGCTGAATACGCTTTGCCCATTCTTTTG AAGGCTTTTTCACTACCTGAACCTTTCTTAAATCTGGCTTCGAATAATAATGATCACTGTGATC ATCAACAGTATCGAATTGCTTAAATGCACTGTATTTTTCATCAATTTTATCATCCATCATGTTC ACAGGTTTGGTCTTATTTGCCATCTCTGCCGCAGTCGTCTGCAACCATGGTAAAGGAGCCTCCA CACCAGGTGGGATATCCAAACCATCAAACTTGGAAGCCAAAGTGAAGTTATATTCACTTTCATA AAGTGTACTATCATAATCGTAATCATCATACTCATCTTCATCATAACCATAATCTTCTTCAAAT GCCTCATAAGCATAGTCATCAATGTTGTTGTAAAATGGGTTCTCTTGAAATATTTTCAGGCCAC CAAGTAATATATCAGGATTTTTTGATGGGTAGGAACTTGGGCCAGCAATTTCACCAGCCAAACT ACTCTTTGCATGCTTTAGCCAGTCTATAGGATATCCAACAGCTTGCTTATTCTTATCAACTGAT GATTTTTCACCAATAATCACAACTCCATCAGGATCATCATCAGCATCCAGTTCAATTACTTCAT GAGGAACAAC
Genomic sequence	CTTTGGTGGATTTCGCAGAGAATATAGCATTGTCCTGCAGGATAGCAGGAAAGTATCTTCATTA TAAGTTAATGAACTCTTCTCGCCATGAGGTGTATTAGCATGCATGGCATATCCAGGCTCATTGA AATAAGGTTTGGCATTCAACACCAAAGCCTGAACTGAGACCAGGACTTGTAGCATTGTTGAGTT TGAAGGACTCCACCTCTCACATCCACTACCAGACCAGGTGTTCAACAGGCTAAGGCACACCTTC CCGCAAGCATACAAGTTTGGATTAAGCCGCAACCCACCAGACCGATAGTTCACCAGCTGCATAG ATTACTAACTATTGTAAGATACTTAAAAATGGAGTGAAACATCATCGATGCTGGTTAAGTCAAA AAAAAAATCTTACTGGAGGTACACTCGGATAATGAGGAGGGAAGTAAATGTCAAAGAAGAAGAG ACCATCATGATAGGGAGTGCCTGCTGGTCCCGTAATAACAGCTCTAAGCAGGTCCATTCTATCC TCATATGCCCTCACGAATATGGTATCTGTAAATATAGGACAAAAATCCAAAGTAAATAATCATA AAAGGACCTCATGAATGTAGTACTTATCAACAGCATGATCGCATCATGCACGACACTTAGCATA AACACTGTACCATTAGCTGTTCATAAAAAAAAGAGCATATGAAGCAACAAAACTACCTGGTAAA TCTTTTTCTAGAACTTTCCACTCGTGCTGAATACGCTTTGCCCATTCTTTTGAAGGCTGTCAAT GGGAAAACTTAGTATCGAACTAACAAGAAAAGGAATATACAGAGGGTACAAAAAAAAGGTTACC TTTTTCACTACCTGAACCTTTCTTAAATCTGGCTTCGAATAATAATGATCACTGTGATCATCAA CAGTATCGAATTGCTTAAATGCACTGTATTTTTCATCAATTTTATCATCCATCATGTTCACAGG TTTGGTCTTATTTGCCATCTCTGCCGCAGTCGTCTGCAACCATGGTAAAGGAGCCTCCACACCA GGTGGGATATCCAAACCATCAAACTTGGAAGCCAAAGTGAAGTTATATTCACTTTCATAAAGTG TACTATCATAATCGTAATCATCATACTCATCTTCATCATAACCATAATCTTCTTCAAATGCCTC ATAAGCATAGTCATCAATGTTGTTGTAAAATGGGTTCTCTTGAAATATTTTCAGGCCACCAAGT AATATATCAGGATTTTTTGATGGGTAGGAACTTGGGCCAGCAATTTCACCAGCCAAACTACTCT GGAGTTGTTCCCACAGAAAATAAGTCAAACTGACGTGGTATAGGAAAAAGGAAAATGAAAATAG AAGACATGAGAAAACTTACCTTTGCATGCTTTAGCCAGTCTATAGGATATCCAACAGCTTGCTT ATTCTTATCAACTGATGATTTTTCACCAATAATCACAACTCCATCAGGATCATCATCAGCATCC AGTTCAATTACTTCATGAGGAACAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_015750 						
					
						PMCS
						0.275064814

Conservation Information
Conserved circRNAs	osi_circ_015750
PMCS	0.275064814

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							27736109-27735132(-)
27735193-27736611(-)
						
					

						Potential amino acid sequence
						
							MANKTKPVNMMDDKIDEKYSAFKQFDTVDDHSDHYYSKPDLRKVQVVKKPSKEWAKRIQHEWKV
LEKDLPDTIFVRAYEDRMDLLRAVITGPAGTPYHDGLFFFDIYFPPHYPSVPPLVNYRSGGLRL
NPNLYACGKVCLSLLNTWSGSGCERWSPSNSTMLQVLVSVQALVLNAKPYFNEPGYAMHANTPH
GEKSSLTYNEDTFLLSCRTMLYSLRNPPKVVPHEVIELDADDDPDGVVIIGEKSSVDKNKQAVG
YPIDWLKHAKSSLAGEIAGPSSYPSKNPDILLGGLKIFQENPFYNNIDDYAYEAFEEDYGYDED
EYDDYDYDSTLYESEYNFTLASKFDGLDIPPGVEAPLPWLQTTAAEMANKTKPVNMMDDKIDEK
YSAFKQFDTVDDHSDHYYSKPDLRKVQVVKKPSKEWAKRIQHEWKVLEKDLPDTIFVRAYEDRM
DLLRAVITGPAGTPYHDGLFFFDIYFPPHYPSVPPLVNYRSGGLRLNPNLYACGKVCLSLLNTW
SGSGCERWSPSNSTMLQVLVSVQALVLNAKPYFNEPGYAMHANTPHGEKSSLTYNEDTFLLSCR
TMLYSLRNPPKVVPHEVIELDADDDPDGVVIIGEKSSVDKNKQAVGYPIDWLKHAKSSLAGEIA
GPSSYPSKNPDILLGGLKIFQENPFYNNIDDYAYEAFEEDYGYDEDEYDDYDYDSTLYESEYNF
TLASKFDGLDIPPGVEAPLPWLQTTAAEMANKTKPVNMMDDKIDEKYSAFKQFDTVDDHSDHYY
SKPDLRKVQVVKKPSKEWAKRIQHEWKVLEKDLPDTIFVRAYEDRMDLLRAVITGPAGTPYHDG
LFFFDIYFPPHYPSVPPLVNYRSGGLRLNPNLYACGKVCLSLLNTWSGSGCERWSPSNSTMLQV
LVSVQALVLNAKPYFNEPGYAMHANTPHGEKSSLTYNEDTFLLSCRTMLYSLRNPPKVVPHEVI
ELDADDDPDGVVIIGEKSSVDKNKQAVGYPIDWLKHAKSSLAGEIAGPSSYPSKNPDILLGGLK
IFQENPFYNNIDDYAYEAFEEDYGYDEDEYDDYDYDSTLYESEYNFTLASKFDGLDIPPGVEAP
LPWLQTTAAEMANKTKPVNMMDDKIDEKYSAFKQFDTVDDHSDHYYSKPDLRKVQVVKKPSKEW
AKRIQHEWKVLEKDLPDTIFVRAYEDRMDLLRAVITGPAGTPYHDGLFFFDIYFPPHYPSVPPL
VNYRSGGLRLNPNLYACGKVCLSLLNTWSGSGCERWSPSNSTMLQVLVSVQALVLNAKPYFNEP
GYAMHANTPHGEKSSLTYNEDTFLLSCRTMLYSLRNPPK(-)
MKILSCYPAGQCYILCEIHQRLFLMK*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	27736109-27735132(-) 27735193-27736611(-)
Potential amino acid sequence	MANKTKPVNMMDDKIDEKYSAFKQFDTVDDHSDHYYSKPDLRKVQVVKKPSKEWAKRIQHEWKV LEKDLPDTIFVRAYEDRMDLLRAVITGPAGTPYHDGLFFFDIYFPPHYPSVPPLVNYRSGGLRL NPNLYACGKVCLSLLNTWSGSGCERWSPSNSTMLQVLVSVQALVLNAKPYFNEPGYAMHANTPH GEKSSLTYNEDTFLLSCRTMLYSLRNPPKVVPHEVIELDADDDPDGVVIIGEKSSVDKNKQAVG YPIDWLKHAKSSLAGEIAGPSSYPSKNPDILLGGLKIFQENPFYNNIDDYAYEAFEEDYGYDED EYDDYDYDSTLYESEYNFTLASKFDGLDIPPGVEAPLPWLQTTAAEMANKTKPVNMMDDKIDEK YSAFKQFDTVDDHSDHYYSKPDLRKVQVVKKPSKEWAKRIQHEWKVLEKDLPDTIFVRAYEDRM DLLRAVITGPAGTPYHDGLFFFDIYFPPHYPSVPPLVNYRSGGLRLNPNLYACGKVCLSLLNTW SGSGCERWSPSNSTMLQVLVSVQALVLNAKPYFNEPGYAMHANTPHGEKSSLTYNEDTFLLSCR TMLYSLRNPPKVVPHEVIELDADDDPDGVVIIGEKSSVDKNKQAVGYPIDWLKHAKSSLAGEIA GPSSYPSKNPDILLGGLKIFQENPFYNNIDDYAYEAFEEDYGYDEDEYDDYDYDSTLYESEYNF TLASKFDGLDIPPGVEAPLPWLQTTAAEMANKTKPVNMMDDKIDEKYSAFKQFDTVDDHSDHYY SKPDLRKVQVVKKPSKEWAKRIQHEWKVLEKDLPDTIFVRAYEDRMDLLRAVITGPAGTPYHDG LFFFDIYFPPHYPSVPPLVNYRSGGLRLNPNLYACGKVCLSLLNTWSGSGCERWSPSNSTMLQV LVSVQALVLNAKPYFNEPGYAMHANTPHGEKSSLTYNEDTFLLSCRTMLYSLRNPPKVVPHEVI ELDADDDPDGVVIIGEKSSVDKNKQAVGYPIDWLKHAKSSLAGEIAGPSSYPSKNPDILLGGLK IFQENPFYNNIDDYAYEAFEEDYGYDEDEYDDYDYDSTLYESEYNFTLASKFDGLDIPPGVEAP LPWLQTTAAEMANKTKPVNMMDDKIDEKYSAFKQFDTVDDHSDHYYSKPDLRKVQVVKKPSKEW AKRIQHEWKVLEKDLPDTIFVRAYEDRMDLLRAVITGPAGTPYHDGLFFFDIYFPPHYPSVPPL VNYRSGGLRLNPNLYACGKVCLSLLNTWSGSGCERWSPSNSTMLQVLVSVQALVLNAKPYFNEP GYAMHANTPHGEKSSLTYNEDTFLLSCRTMLYSLRNPPK(-) MKILSCYPAGQCYILCEIHQRLFLMK*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0557600_circ_g.2

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