Detail information of Os11g0545600_circ_g.3


General Information
CircRNA Name Os11g0545600_circ_g.3
ID in PlantcircBase osa_circ_009554
Alias NA
Organism Oryza sativa
Position chr11: 20101713-20105994  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os11g0545600
Parent gene annotation Reader protein of trimethylated histone H3 lysine 4 (H3K4me3) an
d histone H3 lysine 36 (H3K36me3), Brassinosteroid-regulated gro
wth, Flowering time control (Os11t0545600-01);Similar to H0102C0
9.3 protein. (Os11t0545600-02);MRG family protein. (Os11t0545600
-03)
Parent gene strand -
Alternative splicing Os11g0545600_circ_g.1 Os11g0545600_circ_g.2 Os11g0545600_circ_g.4 Os11g0545600_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0545600-01:7
Os11t0545600-03:3
Os11t0545600-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACTTGTCATGGTGTACAATGGCGACAGAGACTTAGGGGACTTACAAGATAATGGACATGATA
CCGCCACTCATCCTCCTTGTTTTCGGACTTTTGAACttgttatccttctttgtccggtgctcca
agtacttctttagaatatcatcgaccgtgggggaccgaggtagcttcacaagctgcagtacaag
gaaattgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTTATCCTTCTTTGTCCGGTGCTCCAAGTACTTCTTTAGAATATCATCGACCGTGGGGGACC
GAGGTAGCTTCACAAGCTGCAGTACAAGGAAATTGGCTCAGGAAAGGAACTGGTAGAATGATAA
ACAGTTACAGTTAACTTTGGCATACATCACTGAGGACAAACTCATCGTATTCGTAGTTTTCTAA
CAAGTACCTTTTCACATCAGGGATTAGTGCAACATAATGACTTGAAACACTCAAGTCTATCTAG
TTGTTAGTAATTCTTACTTCTTGAAATAGTAACCTTTTTGGGGAAACTTAATTCTTATAAGTTT
CCTTAACATGAGAAATGAACATGACAACATATTGGCATCAGTCAATCATGTTCAAAAAGATGCA
GAAAGTCCAGCTCCACAGATACACGAAATATACAAAAGATACACAATATAACTAATGATCTAGG
TAAGTTTGAGTGGTATATATCAAGGTTGCTTATCTAACAGTAAGGTGGTATATGTCAAAATTTA
GCTGCGGAATGTACAATGAACAATATATCCACTGGTCAAGATTGCTAGTCTTTTTTTCTGAACG
AAATAAAGATTTCAAGTATTCATTCTCTTATTGGTTCCTATTTGATACAAACATGCTTCTCTTA
AGTACCTGTTGTTCCCATGCCAACTCAGACACAATATTCAATTATAATTGAACAATGAAGGTTG
TGATTTGGACATAAATAAATCAAAGACAGCTCAGGGAAAGATTTGAATACCTTACCCAGCTGCG
TGACAAACTCCCAATCATCAACAAGTTGCTTTTTTAGCGTTGAAGGAAAATGTGACATGAAGAG
ACTCTCAGATGATTTTCTTTCTTTCTCCTGGATCAACCAGGGCAGAGTTGTCATTATGTTTACA
AATATACCACAAAACAACTTGATAGATAAAATGATCTACCACATGCTTGCCAAATATAGCTGAA
AGCTTCAAAATGTTAAGTTTGTCAGTCTCCATAACCATAATAGGTAGGTAACGAATTCTCTTCG
CACAATGTAAAACATTAGTTCATAGTTCCAAACTACCAATTTAAATTTAACATGTGTTCTAAAT
TTATCCATACTAACAATTCTTACACAGCTAGATTATTTTTGCTGGTAAGCAAACATCATGTAGT
CCAGAAATCGGATTGTTGTGTAAAGAACTAAACGAAGCACCGAAGCAGCAAGATTTCCTAAAAT
TCATCATTACAATTTTAGAAATGTTGAGAAAATGAAATAGTCATCATCATACAACAAAAGGTCA
AGAACTTTAAGTGTTATACTTATATTGTAAAAAGAGAAGAAAGGTCCATATGGACCATAGAATG
TTCCCATTTTCCACATGTATGATGAAAAATGAACATAACTGCCAAATCATGTACTTCCTCCGTT
TCACAATGTAAGTCATTTTAGCATTTCCTATATTCATATTGATGTTAATGAATCTAGACAGATA
TATATGTCTAGATTCATTGACATCAATATGAATGTGAGAAATGCTAGAATGACTTACATTGTGA
AACGGAGGGAGTAGTACTAGAAATAAAAAGAGAATTAATAAAAAAGTATTATTAGTTCAAAGGA
GCAGAAATATGCTTAATATCAGTAGTTTAGAAATGATATCTCAAAAGGCAAATTGCAGTATCAT
AATTGATGGAAAATGAACTTCATGGAAATCAAATACTTCACAATAAAACATATTTGAAAGTGAG
AGACACCTCAGTCCCACCAGGCTGACTTTTGCGTTTCTTCCCCTTGACTGCAGTTTTAACATCA
CAGAGATCAAATGTAATAAGTATCACACAAATGAGAAGAACCAAGAACTTTGAAAAATGTACGA
GTGAACTTACTAATAATCTTGGTGTCTTCTTTATCAGTTTTTGCATCTGCTGAATGCAATTACA
ATAGGTAAGACATATTTAAGAGGAACAAATTACAAAGTAAGACATAAAATGGAAACCCATCCTT
TGGTGGAAGCATGGGAAAAATTTTGGTATAACCACTATAACAGCATGGGAAATTCCATTCTCAA
TGTAGCAAATAGAGTGGTAGCACCCCATTAAGAATTCAACTTCAAATTGAATGTGTCAGAAACA
AAAATATTTGTTGCAAATAGGAACTTCTATTGCAAATAGGAACTTCTATGTTTTCTTTCCCTTT
GGTTTACCATTTGTCATCATTTCTTATTTCTAGAAGTACAAATAAAATTGCAGTTCAAATTCAA
TAAACAGATAGTTTAACAACTGAAAAGAACATATACAACGTTCTGAGAGTTTTCATGCTGAATT
GGTGTCAAAGCCATGGCAGTTTTCATGATTGGACTGAGAGATAGTTTCCACCATAAAAAACAGA
AATATGATCATGAGTTCATAACCACACCGATATGAAAAAAGATGAATGGGAAATTTCAGAATGT
CCTATATGCACAGTACCAACGCCCATAACAGTAAGCTACCACGTACTTGTACCAGAAGCTATCA
CAAAATTACTCCAAGATTGGTTCATAACTCCAAACTTCGGAAGAAATATCTCCAAGGGTGAAGT
TTGAGCTTAATCCATCAATGTAAATGATCACAGCATTCAGTTATAACCATCACATATTCACAAT
CTCTTTGCCATTTGGCATTTCTACTCTTTTAAGTACAGATTAAGCACTGCCAGGATGATGCTTC
TATTAGCAAAATACAAAATTTATCATAGAAACATGACACTCACAGCTACAGAACAAATTAAAAA
CAACAATTTGGCAAAATAGTTCCTAGAAAGGAAGCTCCCAGTGGAATAGTCTAGACATGATCCA
ACAGCACAAACATTGATTTAACATACATCTAGCTTGTCATGGATAGAAGTAAAAACTATTGACC
CAGTAAAAAAAGCATGTGTCATCAATTCCAATGGAAAGAAGAGGGAGGCATAAGCTAACCATTA
GAGCCTTTTGGCTTATGCTGCGCTGACCGTCCAGATTTTACGCTTTTGTCAACTACTTGGCTCT
TTTCAAGCTCTTGTTGTTTGCGGATATTTTCGTCGGTCAATTTCAGTAAGCGATCATTTGTGAC
CCATTCATCCCAGCTGTACTCATTGAAAATAAACATATTAAGAAGACTGTTTACTTGAATTAGG
AGAGCAGAAAGACAACTAAATAGCATCAGTGCAATGATAGAAACAAGCCCCTCAACAGGATTCA
TGAAAATACTATTAAGAAAAAAAATTGCACCGTAAGGGCAAAGATGTGAGACTACCCAAACATG
GTGGTAGACAACAATATGGCACTGCCAGAAAAAAAATAATACATTAGAACATGCATAAGGTCAT
TCATATCCAACTCAAGGTCCAAAATCCAACTTAGACACTTTTAAACTGTCAAGGGCCTCAGTGA
AATTTTTCATCCAGCACAACTATTAAAAAAATTTGTGTTGCCATCACTTCAATTCACACGTAGA
AAATGGATTGGTCATATTTAAATATATGTCAGTCATCCGGGCTCCAGGCACTCACTCGTATCCT
AAAACAAAAGTCAACAAAACGGGTATAGGATCACTTCCCCAACTGAGACACAGATCATGTTCTA
CAGATGAATTCATCAACATAATCATTCAATTATCATATTTAAAATTATGTTCCATAAACGAATC
TAATGGTTTCATTTACAAGTGAATCTATAAATAGCATTTGATATATTGGTGGTCAAAACTATAA
AAGTTTGATTCGATGGTTTTAAAAAACATCATATATTTCCATTACACAACAAAGAGACACAGAG
TAGCCAGAGCCTGTTCTGAATTCTATGGATTTTATATGATGCTATGATGTAGTTCTGAATTAAT
CAGATTGAGGCCAGTGAGATGCACGAGAAGCTTTGCATAGTTTCACTTTCACATATCTCATGCT
ACTATATGTAATAATAATATCAATTGCTTGATAGAACAAACATCAAATGCATCATATAAGTACA
GGTACAGATATTCCTTGTACGGTTAAAAAAATATTCACATCAACATAAAGAACTCGAAAGCATT
GGTAATAAGTTATTAGCTAAGCATGGAAGACTTATCGATCATCCATGGTATGCACTTGCCTCTT
ATTCCAACCCTACAAAAGAAAAGAGAAAGATTCGTTGGTTCCTCGATATCGAAAGGGAACACCC
AAAGTTAATGATTTATTTTTAAGCACTTGTCATGGTGTACAATGGCGACAGAGACTTAGGGGAC
TTACAAGATAATGGACATGATACCGCCACTCATCCTCCTTGTTTTCGGACTTTTGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.097423535
Functional Information
Coding potential Y
Potential coding position 20105948-20103462(+)
20102540-20104765(-)
Potential amino acid sequence MDMIPPLILLVFGLLNLLSFFVRCSKYFFRISSTVGDRGSFTSLPSCVTNSQSSTSCFFSVEGK
CDMKRLSDDFLSFSSVPPG*(+)
MSHFPSTLKKQLVDDWEFVTQLGKLVKLPRSPTVDDILKKYLEHRTKKDNKFKSPKTRRMSGGI
MSIILVGIRAGMNGSQMIAY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017