Detail information of BGIOSGA023421_circ_igg.1


General Information
CircRNA Name BGIOSGA023421_circ_igg.1
ID in PlantcircBase osi_circ_006889
Alias 6:29133246|29138034
Organism Oryza sativa ssp. indica
Position chr6: 29133246-29138034  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA023421_circ_g.1 BGIOSGA023421_circ_g.2 BGIOSGA023421_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACGTCGGTGGTTTTGGTGCCTTTGATCAGATTGGCCGTGGATCGCGAGGGGATGTGACCATCT
TGCCTACTCTCGTCATCAACAACGTCCAGTACAGAGtcgtcttcttccctcctcctctcgtcgc
ctcttggaaagagagagagagagagagaggtgatcgagttgcagcaatggcgaggagggcgcca
tggctcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCGTCTTCTTCCCTCCTCCTCTCGTCGCCTCTTGGAAAGAGAGAGAGAGAGAGAGAGGTGATCG
AGTTGCAGCAATGGCGAGGAGGGCGCCATGGCTCGCCGGGATTGGGGCCGTGCCGTTCTTGATC
GTCGTCGTGGTGGCGGTGGTGGGCGCCGCCGTGCCGGCGATGGGGAGGTTCGTGGTGGAGAAGA
GCAGCGTGAGGGTGCTCTCGCCGGAGCACATCCGGGGGCACCACGACGCCGCCATCGGCAACTT
CGGCGTGCCGGACTACGGCGGCACGCTCACCGGCGTCGTCGTCTACCCCGACAAGAAGGCCACC
GGCTGCGCCGAGTTCGACGCCAAGTTCAAGTCCAAGTCTCGCCGCCCGGTCATCCTCCTGCTCG
ACCGTGGAGGTAGGAGATTGATTTCAAACTTCCAATGATTGATTCAATTAGTTTGTGCTTGTTT
TGATTTGCATAAGTATTTTTCAAGAAATTTGTGTTCCAAAGTCTGCAAGTCTGAACTGAACAAA
CTTGAGAAGTAGTATTAGTTTTTGATGATTATTTGGATTTTGAGAGTTTGGTTTGGTGATGATT
TGATTCCAATGTTCTAAGTCATGCCAATTTTTGTTCTGTTAATGGGTTGTGTCAATCCAATGGT
TAGCTAGTCCACTGATTAAAAAAACAACAAAAGAAATGGTTAGCAAGAGAGTATCAAGGTAGGC
ATGATGGTTAAGTTGTATAGTATTTTAATTCTTTGATGTGGATTGTTGTCCAACTTTAGAAGTC
TGAAAGATTGCATTCATATATATATATTTTTTATTGTGGCGAGGGAAGGGAATTTATAATTCAG
TTCTGAAAGCAGAGTTGAACGATGGTAGACCAAAACTTTTTAATTTATTTTTGAAATTGTTTGA
GAACTGAGATCACTTACTCCGAATCAAATTGTTTTGTTTGTTTCGCCTGGAAAAACAAGTCCAA
TATTGCAGAATACTACCTAACATAATATCAATAACTAGGACGGAATCTTAGTTCAGAGCCATTA
TTGAAGACATGTTAACCACTTCTTATTCACTACTTATAAGATTCAAACACACACTTAGTTTAAT
TACTTTCGGGATTCGGCTCAACTTTAAGCATTTCGACGAGTTTGTTCCTTTCTTTCCGTCAGAG
TTTCAGATAACTCTGAACCAAGGAAAGCGAGAATAGGTTCTTGATACATATGCCGTACATTTAT
CCATTGTAACTTTGAATTTTGAATCTCATACCTGATTCGGTATTTGATCCAACCACTGCAACGC
ACTTGATCACAACTCCTCCACTACCAATCAGCAGGTGTCTCTCAATTCCTTCAAGCCAAAGGCA
GCACTGAACAACCTGTTCATCCTTCGTTTCCAAGCCACTCTCCATCAGATTCTGAACTCTGCAC
CAGGACACTTTTACCATCAGATTATGAAATAGGAATTGCAAATTGACCCACTTATTCTGTACTA
ATATACTGAAATTCTCACTCAATTCAGTGCATTTTAGTTGCAATAAAGAAGAAGCAATTTTAAT
ATTTTTAATGCAGATAATCAGCTTCATCGTTTGAATTTTTATTCTTTAACTTATCAGTCAACTA
TTTGAATTTTAAATCTTTATTTTAAGTATATTTTGGTTATTTTTTACCGTAATTTATTTTTCAG
CATTAACTTTTAAATCGCTAAGAACATGTATATAAAAAATTTACCAATAAATTATTTTTAATCG
CTAATAAACATTATGGTTTAATTTCTTTTGTCGGTGATAACCTTACATACTATGACTATGTGGG
ATGTAAGTGACCAACCCGCGAAATCCACTGTAGTAAATCAAAATAAACCACGAGCCCGTTTATT
TTGACCTATAAGTGGGCTTACGCCGGGTTAGCCACTTACGCCCCCTGTATGTATGTGAGCCTGA
CAAACTGTTCCGTTTGTTGATATTCAGAGTGCTACTTCGCGCTGAAGGCGTGGAACGCGCAGCA
GGCGGGCGCGGCGGCGGTGCTGATCGCGGACAACGTGGACGAGCAGCTGCTGACGATGGACACG
CCGGAGGAGTCGCCGGAGACGGAGTACATCGACCGGATCAGCATCCCGTCCGCGCTGGTCAACC
GCGCGTTCGGCGAGTCCCTCAAGAGGATGTCGTCGCCGTCGCCGTCGTCAGAGGCGGCGGTGGA
GGTGGTGGTGAAGCTGGACTGGCGCGAGTCGATGCCCCACCCCGACGAGCGGGTGGAGTACGAG
CTGTGGACCAACAGCAACGACGAGTGCGGCGCCCGGTGCGACGAGCAGATGGAGTTCGTCCGCG
GCTTCCGCGGCCACGCCCAGATCATGGAGAGAGGTGGCTACGCCCTCTTCACCCCGCACTACAT
CACCTGGTACTGCCCCGAGGCCTTCAAGCTCACCCAGCAGTGCAAGTCCCAGTGCATCAACCAT
GGCAGGCAAGTGACTTCCTTCGTTTCAGATTATAAATCGTTTCGATTTCTTTTTTTTTAATCAT
ACTTCCTTCATTTTATATTATTATTAAGTCGTTTTCACTTTTCTTATATCCGAACTTAAATTTG
ATTAAGTTTATAGAAAAATTAGTAACATCTACAACACCAAATTGGTTTCACTAAAACTAACATT
TATGTATATTGATAATATTTTTCTTTTGTGTCGTAAATGTTGCTAAGTTTTCTATAAATTTGGT
TAAACTTAGACTACTTATAATATGAAGTACCTCTTTTTAAAAAAATATTGGACGTTGTTACTTT
TTTTTACAAACCCCCTGATCATTCATTTTATTCAAAAAAAATTATGCAAATAAAAAAAGGCAAA
ATTGGTTATATAACATCGAAAGTTCACGTTTTTGGTTTTATAGCACCGAAAGTTACCGGTTCAC
TTTAAGAACACCCTAAGTTCACCATGTTCCCCTTTTTAACACTTCCGTCAATTCTCGATCGTTT
TCCGTCCGTCTTGATCCAGCCACACACACGATATGACGTTTGTATCCCTCACAAGTACAAGTAT
AATGCATGTCAATGAGGGGTAGAAATGTCATATCATGTGTGTGGCTGGATCAATAACGATCAAG
ACGGACGGAAAAATTGATGGAAGTGCTAAAAACATTTGACGACAAATTAAGTTACAATGAAATA
AATAGTGATTACATTTTTTTTTTCAATAAGGTGTATGATCAAACACATATAAAAAAAAAAAGTT
AACGACGTCATACACTGAAAAACGGAAAGAGTATCATAGTATCCTCTTCTTCGTCTCCGGTGGG
GACACCATCATGCGCCATGGATCGATGGAGTGGTTGATCGAGCTCCGGTGAGGATGGGTGCGTG
CAGGTATTGTGCGCCGGACCCGGAGCAGGATTTCGGGGAGGGGTACGAGGGGAAGGACGTGGTG
GTGGAGAACCTGAGGCAGCTGTGCGTGCACCGGGTGGCCAACGAGACCGGGCGGCCATGGGCGT
GGTGGGACTACGTCATGGACTACAAGATCAGGTGCTCCATGAAGGAGAAGAAGTACAGCAAGGG
CTGCGCCGAGGACGTCGTCAAGGCCCTAGGTGAGAATGAGATCCATGGTACCATACATTCAGTG
TGCATATGCTCATCGATCAGTTCATCGTTCTTCGTTACTTGCTCTAATTTGCCATTACACGAAA
GACGCACCTTGAGTATTATACTCCCTCCATCCCAAAATGATCATCATATATGTTTATGCATCAA
GATCAAGGATAATTTAAATTGCATCAATCAAGACATCATATACACATTCTCTCACAATGTATGT
ATCGATTAAAACACCATGTCAATTACATCCTAGTATGTACAGATTCTCCCATGCTATATTAATT
GTATTCCGATGAAATTCATGTCCATGCAATTATATGATGATCAATTTAAGAAAATTTAGATTTC
TTTATATGATGATCAATTTGGGAAGGAGGGAGTATTATGCATATCACACGCATGTACCTTGAGT
ATGTCTACAAAGATACAGAGGCCAGCAAAAAGTACTTAAATTCACTAATGGGAGTGGTTTATAT
TTATGACGTCATATTTTTCATCAAAAAATAGTTAAATCGTTTCGTGTATCAAACTAAAGCTGAA
TTGCACACATCTTACTACTATAAATCTGGATAAATATGAATACTAGGATGCGTCGGTTACTATA
TTTTAGAACGGATGTAGCATGTGCATATGTAACTTTTAGAAAAGATCCACTTTCCTAACTCCAT
ATTAAAAACATACTGCATATGTAACTTTTCCAAAAGATCCGCTTTCCTAACTCCATATTAAAAA
CATATGTGCAATTGTGCATATGTAACTTTTCAAACCAGATCCACTTTCCTAACTCCGTATTAAA
AACATATCCGCACATGCGTATTATCTGTAGACACTATGATTTGAATTTGGTGCTTTTATAATAG
CAAATGTTCTTTTGTTCTTGACCTTTTTCTTTCCTTAGGTCTGTCGCTTGACAAGGTGCTGGAA
TGTATGGGCGATCCAGAGGCCGACACCGACAACGCCGTCTTGGCCAAAGAGCAGGAAGATCAGG
TATATATGCAAAGTGACTGAAACTATACTGTTCATGGTGTCATTAGGAGAAGAATTTTTTTTAG
CGTTTTAATCTTCAGGTGTCAGAGATGTTGGCCAGTCACAATCTCGCAGATCTCTTGCATTACA
TGATGTGTTAAGCCATTAACGTCGGTGGTTTTGGTGCCTTTGATCAGATTGGCCGTGGATCGCG
AGGGGATGTGACCATCTTGCCTACTCTCGTCATCAACAACGTCCAGTACAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021