Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d022010_circ_g.6 |
ID in PlantcircBase | zma_circ_009463 |
Alias | Zm07circ00089, GRMZM2G090715_C2 |
Organism | Zea mays |
Position | chr7: 167925970-167926639 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d022010 |
Parent gene annotation |
Eukaryotic aspartyl protease family protein |
Parent gene strand | - |
Alternative splicing | Zm00001d022010_circ_g.5 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d022010_T004:2 Zm00001d022010_T006:2 Zm00001d022010_T007:2 Zm00001d022010_T001:2 Zm00001d022010_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.554117087 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
167926527-167925972(-) 167926045-167926596(-) |
Potential amino acid sequence |
MSSSSGVLGEDIVSFGRESELKAQRAVFGCENSETGDLFSQHADGIMGLGRGQLSIMDQLVEKG VINDSFSLCYGGMDIGGGAMVLGGVPTPSDMVFSRSDPLRSPYYNIELKEIHVAGKALRVDSRI FDSKHGTVLDSGTTYAYLPEQAFMAFKDADPRFQPDLSSSYSPVKCNVDCTCDSDKKQCTYERQ YAEMSSSSGVLGEDIVSFGRESELKAQRAVFGCENSETGDLFSQHADGIMGLGRGQLSIMDQLV EKGVINDSFSLCYGGMDIGGGAMVLGGVPTPSDMVFSRSDPLRSPYYNIELKEIHVAGKALRVD SRIFDSKHGTVLDSGTTYAYLPEQAFMAFKDADPRFQPDLSSSYSPVKCNVDCTCDSDKKQCTY ERQYAEMSSSSGVLGEDIVSFGRESELKAQRAVFGCENSETGDLFSQHADGIMGLGRGQLSIMD QLVEKGVINDSFSLCYGGMDIGGGAMVLGGVPTPSDMVFSRSDPLRSPYYNIELKEIHVAGKAL RVDSRIFDSKHGTVLDSGTTYAYLPEQAFMAFKDADPRFQPDLSSSYSPVKCNVDCTCDSDKKQ CTYERQYAEMSSSSGVLGEDIVSFGRESELKAQRAVFGCENSETGDLFSQHADGIMGLGRGQLS IMDQLVEKGVINDSFSLCYGGMDIGGGAMVLGGVPTPSDMVFSRSDPLRSPYYNIELKEIHVAG KALRVDSRIFDSKHGTVLDSGTTYAYLPEQAFMAFKDA(-) MGLFWIAGPHMLICQNKLSWLLKMLIHDFNLISPVHIHQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |