Detail information of AT2G04940_circ_g.2


General Information
CircRNA Name AT2G04940_circ_g.2
ID in PlantcircBase ath_circ_012825
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1737690-1739293  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G04940
Parent gene annotation Phospholipid scramblase
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04940.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGAAAAAATACCTGTTCAAAACCAAGAACCAGATTTGCCCATTCAATATCTCTTGTAACCAG
CAAATTCGATCGTGCAAGCAGAGTTGCAATTTTGGCcccaggtataaatcataaattcttctcc
atagatgccatcgtcgatgaacaacaccaatttcctacaccagtaccagacatgacaatgagct
gaaattaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 359
Transcript exons: 1737690-1737751,1737842-1737898,1737992-1738057,1738787-
1738831,1738973-1739014,1739207-1739293
CCCAGGTATAAATCATAAATTCTTCTCCATAGATGCCATCGTCGATGAACAACACCAATTTCCT
CTCCATCAATTTCAGCATATATTGAACTTGTGAGCCACCAGAAAGGTCGACGAACCCGGAAAAG
CTCATTACCCAAAGCATCAGTTATGGAAGCAACAAATGGGCGCCGGGTACGAAGCAGCTGCCGC
GCCAGTAAATTGCTTTGTTCTCGGATAGACCCCACAGGTGCCTCAGGATAGCAAACATCTACTA
CAATATAGCGATTTTCCTGTTCAAAACCAAGAACCAGATTTGCCCATTCAATATCTCTTGTAAC
CAGCAAATTCGATCGTGCAAGCAGAGTTGCAATTTTGGC

Genomic sequence CCCAGGTATAAATCATAAATTCTTCTCCATAGATGCCATCGTCGATGAACAACACCAATTTCCT
ACACCAGTACCAGACATGACAATGAGCTGAAATTAAACAGTTAACATTGGAGTACAGTTTAAAG
GCTTGAAATCCTACGCAAGTGTACCTCTCCATCAATTTCAGCATATATTGAACTTGTGAGCCAC
CAGAAAGGTCGACGAACCTAAACGATGTAGAGGAATTATTTCAGCTCCAAAGAAATTCAACAAT
TCTCTTGCCGGAAACTTTCAAACAACAGAATGTAAGAAAACCTCACCCGGAAAAGCTCATTACC
CAAAGCATCAGTTATGGAAGCAACAAATGGGCGCCGGGTACGAAGCAGCTGCAAATATATTTAA
TATCACATGTGAATGGTTTTTATCATTTAAGTCGACACATATGAAAATCACTGCCAACACAATA
TGTATCTGAATACAATCTCGGAGGTAGAACAGAATCAGATCTATTCTAAGTTCATGGGGATAAC
TGATAGAGGCGACACAAGCTTTGAGTGAGTAATGTTACATTTACTATTATGAAGACTCAAGAAC
ATGGTTTTTAAGCAAACCTATCATTGCTTGCTTAAAGTTGCAATATCAGCGCACTTCGTCCAAA
CATAAAAAATAGGAAACAAAAGACTAGATAAGGAAAACGAAATAGCACATGCAACTGAGGAAAA
ATAGATAGCTAGCAACAGGAATTTCAATGAGGAAAAAAATCACAGTATGCACCTTCCTGAGAGA
AAGATGTTCAAACAACAAATCAAAAATTTCTACTGGAGAATCTAACGCGTGAAAAGAAGTGAAG
CCTCAACAATCAAAGTTGAACCTAGACAATCAATTATTCAAAGAAAGTTCAAGCCTTCCCATTC
ATATGCTCATATAAGGAAAAAAAAAAAGTGCAGACATGCTAACCAAGTATACTCATAACTAGTT
AGGAATAGCAATGAATTGTGTTGTAACACGTCAAAACTTAAAAACACTGCTCATTGGTGACAGC
CAATTTAAAGTATTAACACATAATGATATTAGTTGAGGTATGGAGAAAGAAAATTTCAGAGTGA
GAATGTAACCTGCCGCGCCAGTAAATTGCTTTGTTCTCGGATAGACCCCACAGGCTGTCAAGAA
AGTGAGAAAAAAGAGGTTTGAAATTCGCAAAATTTTATATGAACTCAAGGTCTTATGTAATAGT
AGTGCCCTCCACAATCAAAACTTCCGTAAACGAAAGCCTAGAATCTATGCGTTGAGATAGCACT
TACTGCCTCAGGATAGCAAACATCTACTACAATATAGCGATTTTCCTGCAGAAACAAAAGTAGA
TTACAAGAGTGGTATATCAGATATATGTGGAGAGGAAGGAGATGAAACGGTAGGAATTAACGGG
ACATTTGATATGTAAAAGTTACAAACATGGTATGATTAGTTCATCAGAAACAAGTAACAACGGT
ATTACATAGCCAAATGAGGAACATGAGAATTGGCAGAAAAAATACCTGTTCAAAACCAAGAACC
AGATTTGCCCATTCAATATCTCTTGTAACCAGCAAATTCGATCGTGCAAGCAGAGTTGCAATTT
TGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.227375999
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017