Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G15780_circ_g.2 |
ID in PlantcircBase | ath_circ_002809 |
Alias | At_ciR1311, AT1G15780_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 5431357-5431701 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder, find_circ, CIRI2 |
Parent gene | AT1G15780 |
Parent gene annotation |
unknown protein |
Parent gene strand | - |
Alternative splicing | 1_circ_ag.17 AT1G15780_circ_g.1 |
Support reads | 3/6 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G15780.2:1 AT1G15780.1:1 AT1G15780.3:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.357573773 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5431639-5431359(-) |
Potential amino acid sequence |
MVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKRHTTAMPLSVASLGGS VGDNYKQFAGSETSDLESTATSDGKKARTEVKSISPQALSSAVSDIGSVVSMVDRIAGSAPGNG SRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKRHTTAMPLSVASLGGSVGDNYKQFAGSET SDLESTATSDGKKARTEVKSISPQALSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMT KCRLQARNFMTQEGMMATKKMKRHTTAMPLSVASLGGSVGDNYKQFAGSETSDLESTATSDGKK ARTEVKSISPQALSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQE GMMATKKMKRHTTAMPLSVASLGGSVGDNYKQFAGSETSDLESTATSDGKKARTE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Zhang et al., 2019 |