Detail information of Os03g0784700_circ_g.1


General Information
CircRNA Name Os03g0784700_circ_g.1
ID in PlantcircBase osa_circ_022141
Alias Os_ciR8896
Organism Oryza sativa
Position chr3: 32566888-32568542  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0784700
Parent gene annotation Ferredoxin--NADP reductase, root isozyme, chloroplast precursor
(EC 1.18.1.2) (FNR). (Os03t0784700-01);Ferredoxin--NADP reductas
e, root isozyme, chloroplast precursor (EC 1.18.1.2) (FNR). (Os0
3t0784700-02)
Parent gene strand -
Alternative splicing Os03g0784700_circ_g.2 Os03g0784700_circ_g.3 Os03g0784700_circ_g.4 Os03g0784700_circ_g.5 Os03g0784700_circ_g.6 Os03g0784700_circ_g.7 Os03g0784700_circ_g.8 Os03g0784700_circ_g.9 Os03g0784700_circ_g.10
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0784700-02:4
Os03t0784700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGATCAATAACAATGTGGCATGTCTCTCCTGGAGCCTTGGGGCCTACGATCCTCTCAACCGAG
ACAATTGTGGCGGTGTAAGGCTCCTTTGGTTTGTATatctcgtcgctgtactcctcgatcttgt
cctggacatacatcttgccagcgttcttgtttttctgctccctgcttagcgctttgtcatacct
acaaattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTCGTCGCTGTACTCCTCGATCTTGTCCTGGACATACATCTTGCCAGCGTTCTTGTTTTTCT
GCTCCCTGCTTAGCGCTTTGTCATACCTACAAATTCAACACAATTCAATTATAGCAATATGCAC
GAATATACTTAACAAAAACAGCTCATTTATGTGGTACTCTCAAAGTCAAAGCTCAATAATTCTA
TGATGGCATCAGTTGACAGAGGCATCTATGTTCATTATGTGGCGCTGTTTCAGCCAAGTATGCA
TGTAGTACTAATAATTAATACGAAGAGTCAAGACAGATGATGTCTAGCAACCTGAAATTGTCTG
GATACTGCTTAAGGTAGCTTGTGAACTCTTCATCATAGAGAAGGCTGTCAGTGTTAGCCACACC
AAGGAAGAGCCAGGCCAAGCCACCAAATCTGTACTTTGGGACATCTTCCATGAACATACGGCGT
AGGTAGCCACGGAATGGAGCAACACCAGTGCCAGTAGCTATCATGATGTGAGTTGCATTTGGAT
CTTCCTCAGGCAGGAGCATTATTTTGCCTGACGGACCTGGTGTTCAGAAGGAAATCACTGTGAG
ATACTTGGCATCCATCATGTGCCACAAAGGACATGATGACTAACAAAGAAAAGGGTAAACTAAG
ATGCGATTGCAAACTTTAGTAAGAAAGGAAAAGAGCAAGATAAGATAATCATATTGTAGAAGGG
GCATAATCATATTAGAGGAGAGGCTATTGGAACCTTTGTTGCAGAGAACCGTTTATTTGTTGTT
GGTATGTATGAACTCAGAAATAGGTTGTCTACCAAAGGTGGGTTTCAGGAAAAACGCAACTAAA
ACAACTAATTTTGCTCCGCTTGGAATTAGAAGTTAAACAACCTCATAGGAAACTCACAAAGCCT
TTGCATTCATCTGAAGCTGAAAGAAATCAACTAACCTGTCACTTTAACCTTGTCCCCTGGTTTT
GAATTACATAGGAAGTTACTGCAGACACCATTTTTTGAGGGGTCCTCCTTGCCAGTTTCAGGAT
CATAATAAACGGCACGGCGCACACATAAACTAGTGGTCCTTCCATCGAATGAATCTCCATACCT
TGTAGATGCAATTGAATAAAGACGGACATTATGTGGTGCACCAGGCTTCTTCGGGTTCTCCCCC
TAACAAGCAAAAATGCACAGGGTTTAGAGAACAGTGAAGAGGGTGATGCCCATGGAGATACCAC
TGGAACTGTATTAATAGTGTGTGCACATACTCAAGTCTCCTATCAAGAGCAGGTTTTCTCACCT
AGGTTTACAATTTTAAGCCATTGAATAGAACATTGGAAACAGTGTCTACAGAAATAATCCTAAT
ATACTACCGACTATATCTTTGTAAGTTCTTAATTAATAGTGTCAACGAGACAATCGTTCAATAT
CCAATCAGATAAATAGACTATGAACGAAACCGACAAAGCATAAGCATAATGTTCTATTTTAAAC
AAGGAAAATGATTGAAAGCAGGAATTACTTACTGGAGGAATAATGCCATAGCTTTGCCCCTCCC
AGTAAGGCACATTGCCACCATGATCAATAACAATGTGGCATGTCTCTCCTGGAGCCTTGGGGCC
TACGATCCTCTCAACCGAGACAATTGTGGCGGTGTAAGGCTCCTTTGGTTTGTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.147413414
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015