Detail information of POPTR_0004s22800_circ_g.3


General Information
CircRNA Name POPTR_0004s22800_circ_g.3
ID in PlantcircBase pop_circ_001412
Alias Chr04:22519174-22522360
Organism Populus trichocarpa
Position chr4: 21669958-21673144  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method CIRCexplorer
Parent gene POPTR_0004s22800
Parent gene annotation NA
Parent gene strand +
Alternative splicing POPTR_0004s22800_circ_g.2
Support reads NA
Tissues stem xylem
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered POPTR_0004s22800.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAGGAGAGGAGCAATTGTCACGACTTTCATAGTATGTTATGCTCTCACATCATTTATTGCTG
GTTATGTGAGCGGGGGGATGTATTCTCGCCATGGAGagaatgtggacaaagctgttatttgtca
gcttgaacttgatgaagcaaaggtcaaacaattcaaggatgcaattgagaacagttattggttc
gaattctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAATGTGGACAAAGCTGTTATTTGTCAGCTTGAACTTGATGAAGCAAAGGTCAAACAATTCAA
GGATGCAATTGAGAACAGTTATTGGTTCGAATTCTTCATTGGTATGTTTTGAGCTGTATTCTTC
AGATGTGTTGTTTGTGTGGATGAAAGTGTTGTGGTGCATATGTTTATTAGATATCAGTTTGTTA
AGGCTTCTGTTTATTTAATGGTCAAGATTCCTCTACTCTGTTTGTGCTTCCTTCCCTCTGTTTC
CCTATATCAAGCAGCATGAGTGTGTGCATGTGGGTTTTTTTTTGGAGGTTTACATGATCTTTTA
AATTATATCTTGGAACTAAGTTTCCTTTGTATACTGGGATGCTCATTGTTTACTTTTCTGTCCT
TTTGTCTCTGGTTTGTGATCTTTGGGATTCTGATTGCAAGTTCAGATGATCTGCCATTATGGGG
TATGTATTCACTGAACTTACATTGTTGTACTTTTCTCTCAATTTGACTGGATAATTTATTCTTG
AATATATCCTTATTTATATTTTAGGTTTTGTGGGTGAATTGCGTCCTGATAAGAACAGTGATAA
TGGAAAGCATCTCCTTTTCACGCATAAGAGCATCACTATCAAATATAATAAAGATCAGGTTTGT
GGTTCCTGAACTTCCATATGACTTTCTATTAATGGCATTGCTATTTTTTTTTCTCATCAATGCT
AAAAGCATCTTCGCTTGCAGATTATTCATGTCAATCTCACACAAGAGAATCCAAAGCCCCTTGA
AGCTGGGACAGTGTTGGAGATGACATATTCTGTCAAATGGTCTTTGACTAATGTCAGTTTTGCA
CGTCGCTTTGATGTTTACTTGGACTACCCCTTCTTTGAGCATCAGGTAACATTGGTTTAGTATT
GTGCTTCTCATTGTTTGCTATCTTGATTTACATTGTTTCATTAGTTCTACAAAAACTTTTGATT
GTGGGTTGGATTATTGGCTGTTTAATTGTGTAATTTGTCTATTTGTTTAATTTTACTTATTTAG
TTATAAATGCATTTGAAAGTGCAGATCCATTGGTTTTCCATCTTCAATTCATTCATGATGGTTA
TCTTTCTCACCGGTTTAGTGTCAATGATTTTGATGCGGACACTTAGAAATGACTATGCAAAATA
TGCTCGGGATGATGATGATCTGGTGGAGTCTTTGGTATACTTCTCCCGATTCTTGTTATTGTTT
AAATAATGGGTTTATTGTGAATATTTTTTAATCTTTGGTGTTTTTATAGAGAATTCTTGTAGAT
TCTGACTGGTCAGATTACTCTCTTTTTTATTTATCAATATATTGTTAATTGTGCTAATTATACT
GACATTCTCAGGAAAGAGATGTTAGTGAGGAGACTGGTTGGAAACTTGTTCATGGGGATGTTTT
CCGGCCACCTCGCAGTTTGGTTGTTCTCTCAGCTGTCGTTGGAACAGGTGCTCAGCTAGCGATG
CTTGTGCTTCTTGTCATCTTGATGGCAATTGTTGGAACGTTGTATGTCGGGTATGTTGAGATAT
TACCCCATGTTATACAATTTATCATATTTATATGTTTTATAATTTATCATCAGCAGGTAAACTT
AATATTTGACCTAACAATCCATTGCAGCTATCATTTTTCTGTATTATAGCGCTGGTGCATATTG
GCGATTGCAATTTCCTTGAAGATTGTTATCTTGAACTTCTTTTCTTGTTATACTCTGCACTATC
TTCTTTAAAATGGTCTCCATTTAAGATTAGTACTTAAGTCATCCTGCAAGCTACATGTTAAATG
ATTGTCAAATATGTGTTGACATCAAATAGTGCCTTTATTTATTCCATATATGGAATCAAAGTGC
CCTAGGTTCATCTACTTAGGACATCTACAGTGGCCAATCTTGACTTGCTTGTTAAATCATCTTT
TTTCTGTTTAATTCAAACAACCCTCTCATTTGCCTTAATCTTTTTCTCATTGAACAAGCCACTG
AACCATAACAAACATAAATCTGCAAGGGGCGTGCATCTCTTTGCAGGTAACATTTACCCAACTG
ATCCTCAACAGTTAGCATACCTGTACCCCTCATTTCTACTTTATTCAACCACCACCTACTTGTC
ATCCCGAAACTACGATGTTCTTGACTAAGGTTTATCAGCGGGAGATCTGAGGGGAGGGTTATTG
TGGAGATGGAGGATGCCTTTGACTGTGTTCTTTTCAATGATCGCTTGCAAAATAGTGGTGCCTA
AAGTTGTAAAAGATGGATCCATGGTCATAACTGATATTTCTGCCACCTCTGATGTTGACATCGC
CTTCAGACATCAGGGCGCCGGTGGGTTAGGAAATATGGATTTGGTGCAGTTGGTGCTGTGAGAA
TGGTGCTCTTCAATTGGCATAAAATAAATTAATGACTGGATTTACATTTGAGATTTTTCTGGCA
AGGATTTTGGATGAGTCACAACTTTGGATTCTTGGAATACCTTGGTTGCATGCTTGGATTAGGT
TCGGTATATATTTACAGATAGACATAGAATGATATTCATTTGGTTAATGTCATTTCAGGCTATG
CTTGCTGTGTTGGGGATTTTGTCATTTAACAATAAATTTAGTTTTACTGTGCATCCTCATCTTT
CATTGTGGTATCTTTTGCTGAAATTGAGAGGCGTGGAGATCTCATCTTTTTGAGCCTTTCAAAT
TTAACTTCATTCTTCTATGATAATGAATCATGTATATTGGGTTTGTTATGAATGCTTGCGTCTT
TGAATCATTGTATCACATACTGATGGTTGTGTTGAATCCGTTTGGATTTGCTTGGCTGCTGAAA
ATGCTGTAGAAGTGAAGAGAAGGGACGGGAGATGACAGACATTTTTTAAATGGTTTTTTTAATT
AGAATGTTGATTTAATCTTTGTCTATTGACCTGAGGATATAGTCAACTTCATCCTCTTAAAATT
GGTCTTTTGTTGGATACTGAATGTCTTGAAACCAAGTGATGTAAACTTTAACCAGCAAAAAAGT
TTGGGGTATTCTTGCTGTAATCTTTGTTCTTCCCTTTCAGTCATTGCTTGTGAGGTAATGTTTG
ATGCTATTTATGTGTTGCAGGAGAGGAGCAATTGTCACGACTTTCATAGTATGTTATGCTCTCA
CATCATTTATTGCTGGTTATGTGAGCGGGGGGATGTATTCTCGCCATGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.123458935
Functional Information
Coding potential Y
Potential coding position 21673140-21670745(+)
21673081-21669988(+)
21670746-21673141(+)
21671013-21673098(-)
Potential amino acid sequence MERMWTKLLFVSLNLMKQRSNNSRMQLRTVIGSNSSLVLWVNCVLIRTVIMESISFSRIRASLS
NIIKISIFACRLFMSISHKRIQSPLKLGQCWR*(+)
MLCSHIIYCWLCERGDVFSPWRECGQSCYLSA*(+)
MTYSVKWSLTNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAK
YARDDDDLERDVSEETGWKLVHGDVFRPPRSLVVLSAVVGTGAQLAMLVLLVILMAIVGTLYVG
RGAIVTTFIVCYALTSFIAGYVSGGMYSRHGENVDKAVICQLELDEAKVKQFKDAIENSYWFEF
FIGFVGELRPDKNSDNGKHLLFTHKSITIKYNKDQHLRLQIIHVNLTQENPKPLEAGTVLEMTY
SVKWSLTNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAR
DDDDLERDVSEETGWKLVHGDVFRPPRSLVVLSAVVGTGAQLAMLVLLVILMAIVGTLYVGRGA
IVTTFIVCYALTSFIAGYVSGGMYSRHGENVDKAVICQLELDEAKVKQFKDAIENSYWFEFFIG
FVGELRPDKNSDNGKHLLFTHKSITIKYNKDQHLRLQIIHVNLTQENPKPLEAGTVLEMTYSVK
WSLTNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYARDDD
DLERDVSEETGWKLVHGDVFRPPRSLVVLSAVVGTGAQLAMLVLLVILMAIVGTLYVGRGAIVT
TFIVCYALTSFIAGYVSGGMYSRHGENVDKAVICQLELDEAKVKQFKDAIENSYWFEFFIGFVG
ELRPDKNSDNGKHLLFTHKSITIKYNKDQHLRLQIIHVNLTQENPKPLEAGTVLEMTYSVKWSL
TNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYARDDDDLE
RDVSEETGWKLVHGDVFRPPRSLVVLSAVVGTGAQLAMLVLLVILMAIVGTLYVGRGAIVTTFI
VCYALTSFIAGYVSGGMYSRHG(+)
MDLMLKEGVVQVNIKATCKTDISQRPFDRICHLQHCPSFKGLWILLCEIDMNNLQAKMLIFIIF
DSDALMREKEMLSIITVLIRTQFTHKTNEEFEPITVLNCILELFDLCFIKFKLTNNSFVHILSM
ARIHPPAHITSNK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021