Detailed infomation of each circRNA
General Information | |
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CircRNA Name | POPTR_0004s22800_circ_g.3 |
ID in PlantcircBase | pop_circ_001412 |
Alias | Chr04:22519174-22522360 |
Organism | Populus trichocarpa |
Position | chr4: 21669958-21673144 JBrowse» |
Reference genome | Populus trichocarpa genome v3.0 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | POPTR_0004s22800 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | POPTR_0004s22800_circ_g.2 |
Support reads | NA |
Tissues | stem xylem |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | POPTR_0004s22800.1:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.123458935 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21673140-21670745(+) 21673081-21669988(+) 21670746-21673141(+) 21671013-21673098(-) |
Potential amino acid sequence |
MERMWTKLLFVSLNLMKQRSNNSRMQLRTVIGSNSSLVLWVNCVLIRTVIMESISFSRIRASLS NIIKISIFACRLFMSISHKRIQSPLKLGQCWR*(+) MLCSHIIYCWLCERGDVFSPWRECGQSCYLSA*(+) MTYSVKWSLTNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAK YARDDDDLERDVSEETGWKLVHGDVFRPPRSLVVLSAVVGTGAQLAMLVLLVILMAIVGTLYVG RGAIVTTFIVCYALTSFIAGYVSGGMYSRHGENVDKAVICQLELDEAKVKQFKDAIENSYWFEF FIGFVGELRPDKNSDNGKHLLFTHKSITIKYNKDQHLRLQIIHVNLTQENPKPLEAGTVLEMTY SVKWSLTNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAR DDDDLERDVSEETGWKLVHGDVFRPPRSLVVLSAVVGTGAQLAMLVLLVILMAIVGTLYVGRGA IVTTFIVCYALTSFIAGYVSGGMYSRHGENVDKAVICQLELDEAKVKQFKDAIENSYWFEFFIG FVGELRPDKNSDNGKHLLFTHKSITIKYNKDQHLRLQIIHVNLTQENPKPLEAGTVLEMTYSVK WSLTNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYARDDD DLERDVSEETGWKLVHGDVFRPPRSLVVLSAVVGTGAQLAMLVLLVILMAIVGTLYVGRGAIVT TFIVCYALTSFIAGYVSGGMYSRHGENVDKAVICQLELDEAKVKQFKDAIENSYWFEFFIGFVG ELRPDKNSDNGKHLLFTHKSITIKYNKDQHLRLQIIHVNLTQENPKPLEAGTVLEMTYSVKWSL TNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYARDDDDLE RDVSEETGWKLVHGDVFRPPRSLVVLSAVVGTGAQLAMLVLLVILMAIVGTLYVGRGAIVTTFI VCYALTSFIAGYVSGGMYSRHG(+) MDLMLKEGVVQVNIKATCKTDISQRPFDRICHLQHCPSFKGLWILLCEIDMNNLQAKMLIFIIF DSDALMREKEMLSIITVLIRTQFTHKTNEEFEPITVLNCILELFDLCFIKFKLTNNSFVHILSM ARIHPPAHITSNK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Liu et al., 2021 |