Detail information of Os05g0495600_circ_g.1


General Information
CircRNA Name Os05g0495600_circ_g.1
ID in PlantcircBase osa_circ_042148
Alias NA
Organism Oryza sativa
Position chr5: 24351024-24351209  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0495600
Parent gene annotation Similar to autoinhibited calcium ATPase. (Os05t0495600-00)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0495600-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAATTCGTTTGCTTCTGAGGCATTGAGAACACTTTGCATCGCATTTAAGGATATGGATGAATT
TCCCAATGATCAACCTATATCAGATGATGaaattattctggaacagtgcaataccatccacaat
actgatggaaatatagtaccgctgtcagaaatgcagaagcataatgtattaaatataa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 186
Transcript exons: 24351024-24351209
AAATTATTCTGGAACAGTGCAATACCATCCACAATACTGATGGAAATATAGTACCGCTGTCAGA
AATGCAGAAGCATAATGTATTAAATATAATCAATTCGTTTGCTTCTGAGGCATTGAGAACACTT
TGCATCGCATTTAAGGATATGGATGAATTTCCCAATGATCAACCTATATCAGATGATG

Genomic sequence AAATTATTCTGGAACAGTGCAATACCATCCACAATACTGATGGAAATATAGTACCGCTGTCAGA
AATGCAGAAGCATAATGTATTAAATATAATCAATTCGTTTGCTTCTGAGGCATTGAGAACACTT
TGCATCGCATTTAAGGATATGGATGAATTTCCCAATGATCAACCTATATCAGATGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.138888889
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study