Detail information of BGIOSGA024952_circ_g.1


General Information
CircRNA Name BGIOSGA024952_circ_g.1
ID in PlantcircBase osi_circ_017654
Alias Chr07:552635_552862(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr7: 630048-630275  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA024952
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered BGIOSGA024952-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGTTGGCGACCCATTCTATCAGTTGTGAATGTCCTGTCTTTGTCAAACTTTCTAGGAACAAT
AGGACGACTTTCTGCAGTTCTCTTCTTCATTCTATGctgctggccatctatatccatatcatca
ccatcactggcagctctgctcagtgacctctcacgcttgcgacctctagaccggctgcgggctc
ggtccata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTGGCCATCTATATCCATATCATCACCATCACTGGCAGCTCTGCTCAGTGACCTCTCACGC
TTGCGACCTCTAGACCGGCTGCGGGCTCGGTCCATAGCTGCACTAGGATCAAAACCCATGGATG
AAAGTTGGCGACCCATTCTATCAGTTGTGAATGTCCTGTCTTTGTCAAACTTTCTAGGAACAAT
AGGACGACTTTCTGCAGTTCTCTTCTTCATTCTATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021